Scaffold Ga0272436_1000784

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000784
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64450
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (14.86%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F019584	Metagenome	228	Y
F021452	Metagenome	218	Y
F029296	Metagenome	188	Y
F049323	Metagenome	146	Y
F051591	Metagenome	143	Y
F055317	Metagenome	138	Y
F080688	Metagenome	114	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100078414	F080688	N/A	MFQTLMIQAEMHXTIHLDVHXSSDFENLHEKQTVESTISQLSEHFIKV
Ga0272436_100078416	F002432	GAG	MMKFSDNFNIFSITSMILFYFNKEFHSXMSFNSNMTDYEMTHEXLEARKADDIIIXMKELLSFDHQQLKKMKLIIEVQINKHKXNITYEVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKIDIFYHFRLSISMKHLHSIFSSKLLXLYSEDLLSKQHLKSFRSITIKDDEHXKIDDILNFRRYXDQIQYKVK
Ga0272436_100078421	F049323	N/A	MMKEMNEESAEQRKEVLRMTXRIQQKCARFKLDIASXLVLIKLIRIRSEFXLIQTCS
Ga0272436_100078422	F029296	N/A	MSELLIFDHQQLKKIKQITETQMNKHKXNVIYEVNDQVXLVFENIKITRSCKDLKDKQLNLYSITVKVEIFYRLQLSRSMKHIHSMFSLKCLXSSSNDSLLKQHSELSRSMIIEENEKHXKVNDILNFRRYKERLQYKIKXIKVNHDDEXYYVDKEEFDDSKKVLNEFHKLYSNKSH
Ga0272436_100078429	F029296	N/A	MSKLLIFDHQQLKKIKQIIKAQMNKHKRDIIYEVNDQVXLIFENIQITRSCKDLKDKQLNLYSITVKVEIFYHLQLSRSMKHIHSMFSSKYLQSSLNNFLSKQHSELFKLMIIEENKKHXKVDDILNFRXYRERLQYKIKXIEIDCDDE
Ga0272436_100078432	F019584	N/A	LIQLSTLKEIRFYLIXLNNNQRAIQEIKNREAMIKAKTTKQIIFVEESVKATCRIIEMKMIDQSKSRDAVLTNIKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDHSSNFDSESDSKN
Ga0272436_100078433	F104131	N/A	MSRLFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCKELKAKLQAKKIISSSSIYSEHSRFQKILNSSLFTDEKNSI
Ga0272436_100078438	F002432	N/A	MMKFSDNFNIFSVTSMIFFYFNKEFHSXMSFNSNMTDYEITYEXLKARKANDIVIXMKELLSFNHQQLKKMKLIIEVQINKHKXDIIYEVNDXVXLSFKNIKTTRLCKDLKDKQLNLYQIIAKVSIFYHLHLSVSIKHLHSMFSLKLLXLYFKDSLSEQHSELLKLITIKDDEHXNIDNILNFKCYQDQIQYKVKXKDLNKDDEXYYVDKKKFDNSEKVLNEFHKLYSNKSR
Ga0272436_100078447	F055317	N/A	VNCFKINHFHKHLLCXTNIRLSSYNYXASFFIQFKSTFIFFTMTFKNTSDKDKAFVDFLQQTRSQAFSFIIDLQHTSSFIAFNKSNAEIIILNDIEVXKKCIYDFNKETNHLVEMKQRDKNEIQQLKAQLQAFTAITVNVIITAFSIVTYFEXFKYHKILDSSMFTDEKNSTXKNXFLDIQEKLAMNVDIFSNELYKLSYINFXLADDVVKVIQVRRDFNCDNFYLTVNKLLKKLAQSFYDSDKKDNYHREYINLIQESKKFNDFFNQFQRLYIYLKYQKNVLVIDLKNKINFHLQIFXTAQMKSLIKLSDIXNYLIRLNNKHKTVQEIKNKLFKRDDSKIIISKAIIAV
Ga0272436_100078451	F021452	N/A	MSDNSFDFKLFTVDVILNSLEKIFRFFALINTEVTDMTFTDESLMSKLCECFDIQSISLSKSKLIQLYDETSDXKSITYALYTSIMIQEHKNEMMLLLITCLDQHKIIIENFXLKINQMLINSAND
Ga0272436_100078459	F002432	N/A	MQNDXAKXISIIEFSDNVNTFLIISMISFYFNKEFHSXMNFDLDTTDYEITHEXIEARKADDIVIXMKELLNFDYQQLKKTKLIIEAQINKHRRDIIYKIDNQIXPSFRNVKITRSCKNLKDKQLDFYSIIVKVETFYHLHLFTSMKYIHLMFSSKLLQSYSEDLLSEQHSKSLRSIIIKDDEHXKIDDILNFRRYQGXIQYKVKXKDLDRNDKXYYVDKEKFDDSKKVLNEFYKLYLSKSR
Ga0272436_100078472	F051591	N/A	MLDAITLYFRYXSSCIILLRIVMTDIDLLSCISRKDKIDSDLIRNAVLLXNNIVLCAIFERKRVXFRFLHQYIVFCAVLKLIDDLFFSCEFTLQFINQITVXIDDSFFCVDELSFRRRFWPAXARKISIFDFXLAMQSSVKLLSRMRACFDCMIVLYNLLINLIYHMLR