NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268240_10057212

Scaffold Ga0268240_10057212


Overview

Basic Information
Taxon OID3300030496 Open in IMG/M
Scaffold IDGa0268240_10057212 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)848
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Penjamo
CoordinatesLat. (o)20.686Long. (o)-101.875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036777Metagenome / Metatranscriptome169Y
F102100Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0268240_100572121F036777N/ALISLEVWSDWIDLRYALVYATPEPEGELPRPDVVGTCEVSDRAGTKYVNWTSTVPNFGMVRIHQHTFVPAPPAGTELLELRFSQPKTIPGQGPPLIVGTIDLR
Ga0268240_100572122F102100N/ALLTQLGLVGVLAGFVLTALARAKKVGASWEERGLFAIFAGFGLIMVGLVLAVAIAE

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