Scaffold Ga0311339_10002121

Overview

Basic Information

• Taxon OID: 3300029999
• Scaffold ID: Ga0311339_10002121
• Source Dataset Name: I_Palsa_E3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34514
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070336	Metagenome / Metatranscriptome	123	Y
F080766	Metagenome / Metatranscriptome	114	Y
F089182	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311339_1000212118	F080766	AGGAG	MVKTGLFSLALAAALISFAQPAAAQNYTTRKPMPTVQDYGPFANVKSQSKKAATKTSATKSSSAECGNPASACLFYGGDFVDNPLGSPFLPNGLANENTLLVPGTPYGAATWVPFTVPAGQTWNVTGLFVNNLSSYGVLDQGAEPTSVAAWSINQEVFPGNAGTVIDSGTSPASSTPTGRAAFSLSEFTVQVTGLSIVLTSGSYWMSVVPICSNTADPYCDGIFFATDVEYINTTPTNAYGPPEPVDASFFDSPVFGLSFEPTSGSVGACAGEGCDAFSAGVLGKKAK
Ga0311339_1000212121	F089182	AGTAGG	MLKRSQREPVTGSYKVDRDSRGRLPKGHSEMHFKLVVVDCGKEMLAIETDADTVVSGTLVKGN
Ga0311339_1000212130	F070336	GGAG	MLVKAILATILFLVSLGKCDLWGQENARMSSVLHIQHSVTTSKTGFPQFLYMYQVLDGAKSAASAQALTGNISLENHSSNFSEVLWLLAYWEGKCPANDQSLTGASFLWSDILKNPSQSVSQLRVDLHFPHPLPMTGCVGFVFGGGPLVKGEVVMSADLSLTHEPSSSNGNTVIDLSGEYCF