Scaffold Ga0311352_10844383

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311352_10844383

Scaffold Ga0311352_10844383

Overview

Basic Information
Taxon OID	3300029944 Open in IMG/M
Scaffold ID	Ga0311352_10844383 Open in IMG/M
Source Dataset Name	II_Palsa_E1 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	713
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050789	Metagenome / Metatranscriptome	145	N
F066496	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0311352_108443831	F066496	AGGAG	MSEKNQIVVVLIVALVLGAFVDRITALKIVAGVVLLWTLQNQP
Ga0311352_108443833	F050789	N/A	ERRRKDRKDETHDGRLHMDAGEKQEIARKETVERCQ

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