Scaffold Ga0119944_1008570

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1008570
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1574
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F005878	Metagenome / Metatranscriptome	387	Y
F093799	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10085701	F093799	N/A	RFYCQPCANKAQNWPDGTFWSLKEQLEYAIDDFAGREKLNVELS
Ga0119944_10085702	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRVKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKQKQYALELAETGSLGRALNLAGFFAKPSGSPKKPIQTTKPQLAEFIKEQRPNDPEPIVWDVTAIAEEFGAEVIDEIPLCNHGPMILKQGNKDGKEYRGWVCSERNKSAQCPARWQRIGSDGNWTFQR
Ga0119944_10085704	F005878	GAG	MINEMHPFKCGPCKKVTPHFYITKYESEIQPDAWVWLMECQNCFEQRLFDPIDRVISREDEITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI