NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093799

Metagenome / Metatranscriptome Family F093799

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093799
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 43 residues
Representative Sequence FYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Number of Associated Samples 84
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.89 %
% of genes near scaffold ends (potentially truncated) 97.17 %
% of genes from short scaffolds (< 2000 bps) 87.74 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (71.698 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(20.755 % of family members)
Environment Ontology (ENVO) Unclassified
(47.170 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(50.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60
1Ga0055492_101101391
2Ga0068883_15786712
3Ga0068877_103614511
4Ga0068876_100734917
5Ga0068876_107621831
6Ga0068872_103268251
7Ga0068872_107417031
8Ga0049080_101831072
9Ga0074649_12526411
10Ga0073926_100324701
11Ga0075461_100210014
12Ga0075471_105545242
13Ga0070749_100616801
14Ga0075472_100547806
15Ga0070746_102884502
16Ga0103958_10235701
17Ga0070747_11938782
18Ga0075458_101826612
19Ga0102828_12075201
20Ga0114359_11328691
21Ga0114363_11490501
22Ga0114880_10767034
23Ga0114880_11290243
24Ga0114880_12044621
25Ga0114880_12658511
26Ga0136655_10876781
27Ga0136655_11705742
28Ga0129333_104480254
29Ga0129333_111868671
30Ga0129324_103237382
31Ga0129336_104140542
32Ga0129336_104685081
33Ga0102688_15321172
34Ga0153805_10256403
35Ga0153801_10284031
36Ga0172371_110516482
37Ga0181339_10315432
38Ga0181364_10491652
39Ga0181363_10221061
40Ga0181352_10287051
41Ga0181352_10872241
42Ga0181357_12852361
43Ga0169931_109594352
44Ga0188839_10308402
45Ga0181359_10137291
46Ga0211726_106528532
47Ga0211729_101358352
48Ga0211729_105141362
49Ga0194134_102071661
50Ga0211731_107441972
51Ga0211731_117533292
52Ga0208601_10214733
53Ga0210365_102619212
54Ga0181351_11428903
55Ga0255223_10640612
56Ga0255151_10476811
57Ga0255176_10541611
58Ga0255243_11211611
59Ga0255156_10290561
60Ga0255156_10831192
61Ga0209900_10125611
62Ga0255098_10332662
63Ga0255070_10050486
64Ga0255204_10895402
65Ga0255086_10245931
66Ga0255084_10091421
67Ga0209356_10188548
68Ga0209033_10532015
69Ga0209442_12457332
70Ga0209972_102302051
71Ga0209990_1002276610
72Ga0209550_103441101
73Ga0247834_10744101
74Ga0255184_10305664
75Ga0238435_1209511
76Ga0119944_10085701
77Ga0307376_108587091
78Ga0315907_100986661
79Ga0315907_112120482
80Ga0315900_104788683
81Ga0315909_100795581
82Ga0315909_101406331
83Ga0315909_105966022
84Ga0315904_102061375
85Ga0315904_103954331
86Ga0315904_105666011
87Ga0315901_102503381
88Ga0315901_109425812
89Ga0315901_109587001
90Ga0315901_110858211
91Ga0315901_112416011
92Ga0315906_110356371
93Ga0315906_110812431
94Ga0316617_1026524152
95Ga0334982_0537945_362_511
96Ga0334994_0392886_558_671
97Ga0334986_0581342_421_534
98Ga0335005_0402752_663_785
99Ga0310130_0001509_610_762
100Ga0335027_0844525_1_135
101Ga0335029_0683061_10_153
102Ga0335030_0188185_1317_1445
103Ga0335051_0043900_1_147
104Ga0335056_0641672_419_544
105Ga0335065_0304106_2_163
106Ga0335064_0893815_383_535
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 27.91%    β-sheet: 0.00%    Coil/Unstructured: 72.09%
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510152025303540FYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
78.3%21.7%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Aquatic
Freshwater
Freshwater
Surface Ice
Aqueous
Freshwater To Marine Saline Gradient
Estuarine
Natural And Restored Wetlands
Saline Water And Sediment
Soil
Groundwater Sand
Sand
Soil
Fracking Water
20.8%13.2%5.7%6.6%15.1%11.3%6.6%6.6%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0055492_1011013913300004051Natural And Restored WetlandsPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP*
Ga0068883_157867123300005419Freshwater LakeLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP*
Ga0068877_1036145113300005525Freshwater LakeKAQVRFYCQPCADEVQNWPDGTFYSLKEQLDDAINDFAGREKLDVELP*
Ga0068876_1007349173300005527Freshwater LakeVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP*
Ga0068876_1076218313300005527Freshwater LakeNEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS*
Ga0068872_1032682513300005528Freshwater LakeCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS*
Ga0068872_1074170313300005528Freshwater LakeFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR*
Ga0049080_1018310723300005582Freshwater LenticQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINQFAGREKLDVELP*
Ga0074649_125264113300005613Saline Water And SedimentFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP*
Ga0073926_1003247013300005943SandAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR*
Ga0075461_1002100143300006637AqueousVRFYCQSCANEAQNWPDGTFWSLKEQLEAAIDDFAGREKLNVQLP*
Ga0075471_1055452423300006641AqueousRMQVRFYCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS*
Ga0070749_1006168013300006802AqueousQNWPDGTFYSLKEQLEDALKTTAKQEKLDVELPR*
Ga0075472_1005478063300006917AqueousEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP*
Ga0070746_1028845023300006919AqueousQPCADEVQNWPDGTFWTLKEQLEMAIDEFAGREKLNVELP*
Ga0103958_102357013300007212Freshwater LakePCANDVQNWPDGTFWSLKEQLDYAIEQFAGSEKLNVELPR*
Ga0070747_119387823300007276AqueousYCQPCADEAQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP*
Ga0075458_1018266123300007363AqueousLRRAQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR*
Ga0102828_120752013300007559EstuarineFYCQPCADDAQNWPDGTFYSLKEQLEDVINDFAGREKLDVELPR*
Ga0114359_113286913300008122Freshwater, PlanktonPLRKAQVRFYFQPCADEAQNWPDGTFHSLKEQLEDAINDFAGREKLDVELP*
Ga0114363_114905013300008266Freshwater, PlanktonQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR*
Ga0114880_107670343300008450Freshwater LakeEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS*
Ga0114880_112902433300008450Freshwater LakeQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELA*
Ga0114880_120446213300008450Freshwater LakeAQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP*
Ga0114880_126585113300008450Freshwater LakeMQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVE
Ga0136655_108767813300010316Freshwater To Marine Saline GradientLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR*
Ga0136655_117057423300010316Freshwater To Marine Saline GradientLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINQFAGREKLDVELP*
Ga0129333_1044802543300010354Freshwater To Marine Saline GradientQPCAAEAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP*
Ga0129333_1118686713300010354Freshwater To Marine Saline GradientMQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREQLDVELS*
Ga0129324_1032373823300010368Freshwater To Marine Saline GradientCADEAQNWPDGTFYSLKEQLEDAINQFAGREKLDVELPR*
Ga0129336_1041405423300010370Freshwater To Marine Saline GradientEVQNWPDGTFWSLKEQLEMAIDEFAGREKLNVELP*
Ga0129336_1046850813300010370Freshwater To Marine Saline GradientAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS*
Ga0102688_153211723300011381Freshwater LakeDEAQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP*
Ga0153805_102564033300012013Surface IceYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVQLPR*
Ga0153801_102840313300012017FreshwaterYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR*
(restricted) Ga0172371_1105164823300013138FreshwaterAQNWPDGTFYSLKEQLQDAINDFAGREKLDVELP*
Ga0181339_103154323300017700Freshwater LakeADEAQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP
Ga0181364_104916523300017701Freshwater LakeQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISDFAGREKLDVELPR
Ga0181363_102210613300017707Freshwater LakeAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINNFAGREKLNVELP
Ga0181352_102870513300017747Freshwater LakePTRRMQVRFYCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS
Ga0181352_108722413300017747Freshwater LakePCANEVQNWADGTFWSLKEQLDFAIKHYAEQEKLNVELA
Ga0181357_128523613300017777Freshwater LakeRALRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISDFAGREKLDVELPR
Ga0169931_1095943523300017788FreshwaterPCADEAQNWPDGTFYSLKEQLQDAINDFAGREKLDVELP
Ga0188839_103084023300019122Freshwater LakeYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0181359_101372913300019784Freshwater LakeQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0211726_1065285323300020161FreshwaterDDVQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Ga0211729_1013583523300020172FreshwaterDDVQNWPDGTFYSLKQQLEDAINDFAGREKLDVQLP
Ga0211729_1051413623300020172FreshwaterCADDVQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP
Ga0194134_1020716613300020179Freshwater LakeVRFYCQPCANEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Ga0211731_1074419723300020205FreshwaterCADDVQNWPDGTFYSLKEQLEDAINDFAGREKLNVELS
Ga0211731_1175332923300020205FreshwaterCADDVQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Ga0208601_102147333300020532FreshwaterAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0210365_1026192123300021351EstuarineTPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0181351_114289033300022407Freshwater LakeEECQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0255223_106406123300024480FreshwaterCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0255151_104768113300024496FreshwaterRFYCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS
Ga0255176_105416113300024507FreshwaterQVRFYCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS
Ga0255243_112116113300024569FreshwaterRFYCQPCADASQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0255156_102905613300026478FreshwaterFYCQPCANEVQNWPDGTFWSLKEQLDYAIEQFAGSEKLNVELP
Ga0255156_108311923300026478FreshwaterRRMQVRFYCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS
Ga0209900_101256113300026888Groundwater SandRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0255098_103326623300027126FreshwaterKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0255070_100504863300027133FreshwaterRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0255204_108954023300027157FreshwaterPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP
Ga0255086_102459313300027486FreshwaterVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINQFAGREKLDVELPR
Ga0255084_100914213300027488FreshwaterVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0209356_101885483300027644Freshwater LakeVRFYCQPCADEVQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP
Ga0209033_105320153300027697Freshwater LakeVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISDFAGREKLDVELPR
Ga0209442_124573323300027732Freshwater LakeKAQVRFYCQPCADDVQNWPDGTFYSLKEQLEDAINDFAGREKLDVQLP
Ga0209972_1023020513300027793Freshwater LakePCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS
Ga0209990_10022766103300027816Freshwater LakeNEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS
Ga0209550_1034411013300027892Freshwater LakeDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
(restricted) Ga0247834_107441013300027977FreshwaterCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Ga0255184_103056643300028091FreshwaterETPTRRMQVRFYCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS
Ga0238435_12095113300029349FreshwaterFYCQSCANEAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP
Ga0119944_100857013300029930AquaticRFYCQPCANKAQNWPDGTFWSLKEQLEYAIDDFAGREKLNVELS
Ga0307376_1085870913300031578SoilPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Ga0315907_1009866613300031758FreshwaterAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP
Ga0315907_1121204823300031758FreshwaterADEVQNWPDGTFWSLKEQLEMAIDEFAGREKLNVELP
Ga0315900_1047886833300031787FreshwaterCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS
Ga0315909_1007955813300031857FreshwaterCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Ga0315909_1014063313300031857FreshwaterEAQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP
Ga0315909_1059660223300031857FreshwaterPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREQLDVELPR
Ga0315904_1020613753300031951FreshwaterQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0315904_1039543313300031951FreshwaterRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELP
Ga0315904_1056660113300031951FreshwaterRRGQVRFYCQPCANEAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP
Ga0315901_1025033813300031963FreshwaterAQVRFYCQPCADDVQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
Ga0315901_1094258123300031963FreshwaterAQVRFYCQPCADDVQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP
Ga0315901_1095870013300031963FreshwaterCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS
Ga0315901_1108582113300031963FreshwaterAQVRFYCQPCADDAQNWPDGTFYSLKEQLQDAINDFAGREKLDVQLP
Ga0315901_1124160113300031963FreshwaterCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0315906_1103563713300032050FreshwaterQSETPLRRAQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0315906_1108124313300032050FreshwaterVWKVQSETPLRRAQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0316617_10265241523300033557SoilWKVQSETPLRRAQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0334982_0537945_362_5113300033981FreshwaterRAQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0334994_0392886_558_6713300033993FreshwaterNEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0334986_0581342_421_5343300034012FreshwaterDDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0335005_0402752_663_7853300034022FreshwaterQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVQLP
Ga0310130_0001509_610_7623300034073Fracking WaterMRRGQVRFYCQPCANEAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP
Ga0335027_0844525_1_1353300034101FreshwaterMFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELP
Ga0335029_0683061_10_1533300034102FreshwaterMQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS
Ga0335030_0188185_1317_14453300034103FreshwaterYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS
Ga0335051_0043900_1_1473300034109FreshwaterAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0335056_0641672_419_5443300034120FreshwaterQPCADDAQNWPDGTFYSLKEQLEDAINQFAGREKLDVELPR
Ga0335065_0304106_2_1633300034200FreshwaterTPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINQFAGREKLNVELPR
Ga0335064_0893815_383_5353300034357FreshwaterRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAISDFAGREKLDVELPR


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