Scaffold Ga0119944_1002833

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1002833
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2947
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F006743	Metagenome / Metatranscriptome	365	Y
F051794	Metagenome	143	N
F088554	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100283310	F002827	N/A	KEYYQAKADLCRDLAIKQMVEGNAKEAGDNLIRMVNALNQINLINYKEEKGNA
Ga0119944_10028332	F088554	GAG	MTEKHSWYKSALRRKKVAEAKKLKAARYVDEMNKRAEQYDATHPK
Ga0119944_10028337	F006743	AGGAG	MRTENWQSNMRGLRLVGEEESGPVLNPYGPVRAGLTTSHRTQNQALSELLNCLEREVETLNSKYCEAYVTLMSVMDHLARLSAIITEPRTTDTL
Ga0119944_10028338	F051794	GGAGG	MKTTDKRKANAEKRAVWLRNYQRARGRAQTRLAQQYPDQYKAILEQERLSDEAEGKAWLDITGATDNSDGVSTDTDGYDNALRPKQADGDEQDEGDLEGEE
Ga0119944_10028339	F005146	AGGAGG	MRNVNFFEVQDRKGDVAWGGASASEAVEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITALVLATITSERERAR