Scaffold Ga0119944_1002452

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1002452
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3197
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027495	Metagenome	194	Y
F056573	Metagenome	137	Y
F096913	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10024522	F027495	AGG	VKHRETHPTLDVEGCFACRISHVAISGAATPTRKEVGDMNRKERILDKDLDAYKRIRKTGGQPSQIDGSARLEATAD
Ga0119944_10024523	F056573	N/A	MSIFRTPTDDFMFLGIPPKEFDSQEARLSYALFKHYDPEPRGRNVFLLDDGTYTENEPSDMSTVVKTYYGGHDNVVDANEVASLTAAGYGAYIT
Ga0119944_10024527	F096913	N/A	SLWDNSTAGNCLWKGALSASAAVTAGDTFQITSLTLTLD