NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F096913

Metagenome / Metatranscriptome Family F096913

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F096913
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 41 residues
Representative Sequence WDASTAGNCLWTGALSSSAAVTAGDTFQITSLTLSLD
Number of Associated Samples 89
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Viruses
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 85.58 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Duplodnaviria (47.115 % of family members)
NCBI Taxonomy ID 2731341
Taxonomy All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(29.808 % of family members)
Environment Ontology (ENVO) Unclassified
(32.692 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(51.923 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1Ga0049085_101181391
2Ga0049085_101750981
3Ga0075474_100483084
4Ga0075474_101019033
5Ga0070749_101598444
6Ga0075459_10974381
7Ga0075477_100717721
8Ga0070746_102450662
9Ga0070745_10744811
10Ga0070745_11180873
11Ga0070745_11537511
12Ga0070752_12266391
13Ga0075458_101903633
14Ga0099851_10209336
15Ga0099851_11441141
16Ga0099851_12057652
17Ga0099851_13611451
18Ga0099848_11119953
19Ga0099848_11141531
20Ga0099846_11907472
21Ga0070751_11645692
22Ga0102862_10036639
23Ga0105745_10019401
24Ga0105747_11547381
25Ga0105748_102252551
26Ga0114880_10268026
27Ga0114977_101177761
28Ga0105102_106186241
29Ga0114979_108405642
30Ga0114976_104602481
31Ga0126447_10864731
32Ga0129333_115566962
33Ga0129336_107350482
34Ga0133913_102829021
35Ga0136558_10883241
36Ga0153801_10800862
37Ga0163212_12644932
38Ga0182095_18450112
39Ga0182090_10972362
40Ga0181365_10046778
41Ga0181358_10456135
42Ga0181357_10838972
43Ga0181357_12353702
44Ga0181357_12678932
45Ga0181349_11415352
46Ga0181346_11372593
47Ga0181355_11278862
48Ga0181584_100747185
49Ga0181584_109064761
50Ga0181580_104812763
51Ga0180432_109004242
52Ga0181579_105261242
53Ga0181601_104460932
54Ga0181563_107926192
55Ga0181592_103048394
56Ga0181593_104415401
57Ga0182077_15467141
58Ga0182075_13711792
59Ga0182075_14201263
60Ga0182058_15375821
61Ga0181359_10733711
62Ga0181594_100955481
63Ga0181597_100767411
64Ga0222714_101617791
65Ga0196883_10156113
66Ga0196901_12002021
67Ga0181351_11858542
68Ga0255761_100877331
69Ga0255772_102877373
70Ga0256299_10880361
71Ga0255243_10792072
72Ga0208004_10874302
73Ga0208160_10081821
74Ga0208160_10706711
75Ga0208898_10579065
76Ga0208547_10896241
77Ga0208917_10106739
78Ga0208645_11434111
79Ga0208916_101476321
80Ga0255064_10352191
81Ga0255080_10391362
82Ga0255081_10281611
83Ga0208975_10225701
84Ga0209297_10212581
85Ga0209088_103659911
86Ga0209500_101336991
87Ga0209246_1000654412
88Ga0209354_1000646114
89Ga0306869_10922922
90Ga0119944_10024527
91Ga0315909_101615411
92Ga0315274_114753122
93Ga0315284_121731921
94Ga0315276_111106692
95Ga0334986_0186635_3_128
96Ga0334983_0489954_3_119
97Ga0335022_0561342_466_582
98Ga0335033_0280153_2_148
99Ga0335033_0315104_2_109
100Ga0335053_0242045_1037_1162
101Ga0335058_0247954_926_1036
102Ga0335048_0129271_3_110
103Ga0348335_020616_1_117
104Ga0348335_081274_2_127
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 4.62%    β-sheet: 0.00%    Coil/Unstructured: 95.38%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035WDASTAGNCLWTGALSSSAAVTAGDTFQITSLTLSLDSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains




 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
79.8%20.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater Lake
Freshwater Lake
Freshwater
Sediment
Aquatic
Freshwater
Freshwater
Aqueous
Freshwater To Marine Saline Gradient
Estuary Water
Estuarine
Salt Marsh
Estuarine Water
Saline Lake
Hypersaline Lake Sediment
Meromictic Pond
11.5%2.9%8.7%6.7%2.9%4.8%29.8%2.9%17.3%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0049085_1011813913300005583Freshwater LenticTYTHWSLWDALTAGNALWSGALSSSAAVTAGDTFQITSLTLSLD*
Ga0049085_1017509813300005583Freshwater LenticDLTAGNALWTGALSTSAAVTAGDTFQITTLTLSLD*
Ga0075474_1004830843300006025AqueousDASTAGNCLWTGSLASSASVDAGDTFQITSLTLTLD*
Ga0075474_1010190333300006025AqueousDASSAGNCLWTGALTSSASLEAGDTFQITSLTLTLD*
Ga0070749_1015984443300006802AqueousASAGNCLWSGALSASAAVVAGDTFQITTSTLTLD*
Ga0075459_109743813300006863AqueousNASAGNCLWKGALSSSAAVTAGDTFQITSLTLTLD*
Ga0075477_1007177213300006869AqueousTHWSMWDASTAGNCLWTGSLASSASVDAGDTFQITSLTLTLD*
Ga0070746_1024506623300006919AqueousLWDALSSGNALWSGALASSAAVVAGDTFQITSLTLTLE*
Ga0070745_107448113300007344AqueousTYTHWSMWDASTAGNCLWTGSLASSASVDAGDTFQITSLTLTLD*
Ga0070745_111808733300007344AqueousETYTHWSLWDALSSGNALWSGALASSAAVVAGDTFQITSLTLTLE*
Ga0070745_115375113300007344AqueousTFTHWSLWDAASSGNCLWSGSLASSAVVVAGDSFSISLLTLALD*
Ga0070752_122663913300007345AqueousHWSMWDASTGGNCLWYGSLSSSAALQAGDTFQITTLTLTLD*
Ga0075458_1019036333300007363AqueousDASTGGNALWSGALSSSASVTAGDTFQITSLTLTLD*
Ga0099851_102093363300007538AqueousWDAASAGNCLWSGALSASAAVVAGDTFQITSLTLTLD*
Ga0099851_114411413300007538AqueousSLWDASTGGNALWTGALSASAAVTAGDTFQITSLTLSLD*
Ga0099851_120576523300007538AqueousAWDASTAGNALWYGALSSSASVTAGDTFQITSLTLTLD*
Ga0099851_136114513300007538AqueousETYTHWSAWDASTAGNALWYGALSSSASVTAGDTFQITSLTLTLD*
Ga0099848_111199533300007541AqueousWSAWDASSAGNCLWTGALTSSASLEAGDTFQITSLTLTLD*
Ga0099848_111415313300007541AqueousLWVSFSTGNCLWTGQFSAPAAVVAGDTFQVTSLTLTLD*
Ga0099846_119074723300007542AqueousSTGGNALWTGALSASAAVTAGDTFQITSLTLSLD*
Ga0070751_116456923300007640AqueousHWSLWDASTGGNALWSGALSSSAAVTAGDTFQITALTLSLD*
Ga0102862_100366393300007670EstuarineYTHWSLWDASTAGNALWSGALSASAAVTAGDTFQITTLTLSLD*
Ga0105745_100194013300007972Estuary WaterHWSLWDASTAGNALWSGALSASAAVTAGDTFQITTLTLSLD*
Ga0105747_115473813300007974Estuary WaterWSLWDASTSGNALWTGALSSSAAVTAGDTFQITSLTLSLD*
Ga0105748_1022525513300007992Estuary WaterSTAGNALWSGALSASAAVTAGDTFQITSLTLSLD*
Ga0114880_102680263300008450Freshwater LakeHWSAWDNATTGNCLWSGALSASASVAAGDTFQITSLTLTLD*
Ga0114977_1011777613300009158Freshwater LakeASTAGNALWTGALSSSAAVTAGDTFQITSLTLSLD*
Ga0105102_1061862413300009165Freshwater SedimentMWDASTAGNCLWTGALSSSAAVTAGDTFQITSLTLSLD*
Ga0114979_1084056423300009180Freshwater LakeDASTAGNCLWSGAFSSSAAVTAGDTFQITSLTLTLD*
Ga0114976_1046024813300009184Freshwater LakeNVSTTETYSHWSLWDDVTAGNALWTGALSTSAAVTAGDTFQITTLTLSLD*
Ga0126447_108647313300009470Meromictic PondMWDASTSGNPLWSGALSASAAVTSGDTFQITSLTLSLD*
Ga0129333_1155669623300010354Freshwater To Marine Saline GradientYSHWSLWDNLTAGNCIWTGALSSSAAVTAGDTFEITSLTLSLD*
Ga0129336_1073504823300010370Freshwater To Marine Saline GradientDNATTGNCLWTGGLSSSAAVTAGDTFQITSITLSLD*
Ga0133913_1028290213300010885Freshwater LakeETLTHWSAWDASTAGNALWTGALSSSAAVTAGDTFQITTLTLSLD*
Ga0136558_108832413300011189Saline LakeSATGTPVAEWTSVSTTETYSHFSIWDAATVGNCLGSGALGASAAMTAGDTFQLTALTWTLD*
Ga0153801_108008623300012017FreshwaterWDASTAGNALWTGALSASAAVTAGDTFQITTLTLSLD*
Ga0163212_126449323300013087FreshwaterYTHWSAWDASTAGNNLWSGALSASASVAAGDTFQITSLTLTLD*
Ga0182095_184501123300016791Salt MarshSDTGGTAIWYGALSGSATVAVGDTFQITSLTLTLD
Ga0182090_109723623300016797Salt MarshWDASTAGNCLWSGALASSAAVTAGDTFQITSLTLSLD
Ga0181365_100467783300017736Freshwater LakeSHWSMWDDLTAGNALWSGALATSAAVTAGDTFQITSLTLSLD
Ga0181358_104561353300017774Freshwater LakeIVTSATMEWTNVSTTETYSQWSMWDDLTAGNVLWSGALATSAAVTAGDTFQITSLTLSLD
Ga0181357_108389723300017777Freshwater LakeEWTNVSTTETYSHWSMWDDLTAGNALWSGALATSAAVTAGDTFQITSLTLSLD
Ga0181357_123537023300017777Freshwater LakeSHWSLWDALTAGNALWTGALSTSAAVTAGDTFQITTLTLSLD
Ga0181357_126789323300017777Freshwater LakeHWSLWDASTAGNALWSGALSASAAVTAGDTFQITTLTLSLD
Ga0181349_114153523300017778Freshwater LakeLWDALTAGNALWTGALSTSAAVTAGDTFQITTLTLSLD
Ga0181346_113725933300017780Freshwater LakeNVASTETLTHWSLWDNLTAGNALWTGALSSSAAVTAGDTFQITTLTLSLD
Ga0181355_112788623300017785Freshwater LakeSLWDAVTAGNALWTGALSTSAAVTAGDTFQITTLTLSLD
Ga0181584_1007471853300017949Salt MarshAWDASTSGNALWYGALSSSASVTAGDTFQITSLTLTLD
Ga0181584_1090647613300017949Salt MarshHWSAWDASSAGNCLWTGALTSSASLEAGDTFQITSLTLTLD
Ga0181580_1048127633300017956Salt MarshSAWDASTAGNALWYGALSSSASVTAGDTFQITSLTLTLD
Ga0180432_1090042423300017989Hypersaline Lake SedimentGSMASSAAVTWTDVAANETYTHWSMWDASSAGNALWYGALSSSATVTAGDTFQITSLTLTLN
Ga0181579_1052612423300018039Salt MarshASSAGNCLWTGALTSSASLEAGDTFQITSLTLTLD
Ga0181601_1044609323300018041Salt MarshADTSGTAIWYGALSGSATVAVGDTFQITSLTLTLD
Ga0181563_1079261923300018420Salt MarshTHWSLWDALTAGNPLWSGALSTSASVTAGDTFQITSLTLSLD
Ga0181592_1030483943300018421Salt MarshLWDAASSGNCLWTGALSASAAVVAGDTFQITSLTLTLD
Ga0181593_1044154013300018423Salt MarshTHWSAWDASTSGNALWYGALSSSASVTAGDTFQITSLTLTLD
Ga0182077_154671413300019281Salt MarshYTHWSAWDASTSGNALWYGALSSSASVTAGDTFQITSLTLTLD
Ga0182075_137117923300019282Salt MarshATETYTHWSLWDALSSGNALWSGALASSAAVVAGDTFQITSLTLTLD
Ga0182075_142012633300019282Salt MarshAWDASTAGNALWYGALSSSASVTAGDTFQITSLTLTLD
Ga0182058_153758213300019283Salt MarshSMHDASTSGNCLCYGALSSSASVTAGDTFQRTSLPLTLD
Ga0181359_107337113300019784Freshwater LakeEMWDDVTAGNALWTGALSTSAAVTAGDTFQITTLTLSLD
Ga0181594_1009554813300020054Salt MarshSWWDAASAGNCLWSGALSASAAVVAGDTFQITSLTLTLD
Ga0181597_1007674113300020194Salt MarshTHWSLWSSDTGGTAIWYGALSGSATVAVGDTFQITSLTLTLD
Ga0222714_1016177913300021961Estuarine WaterLWDASTGGNALWSGALSSSAAVTAGDTFQITNLTLSLD
Ga0196883_101561133300022050AqueousLWTDPSAGDPLWSGALASSAAVTAGDTFQITSLTLTLD
Ga0196901_120020213300022200AqueousHWSAWDASTSGNALWYGALSSSASVTAGDTFQITSLTLTLD
Ga0181351_118585423300022407Freshwater LakeEKKENVAATEVYTHWSMWDAASGGTALWFGALSSSASVTAGDTFEITSLTLTLD
Ga0255761_1008773313300023170Salt MarshASTAGNALWYGALSSSASVTAGDTFQITSLTLTLD
Ga0255772_1028773733300023176Salt MarshWDASTSGNALWYGALSSSASVTAGDTFQITSLTLTLD
Ga0256299_108803613300024533FreshwaterTHWSLWDASTAGNALWTGALSASAAVTAGDTFQITTLTLSLD
Ga0255243_107920723300024569FreshwaterMWDASTAGNALWSGALSASAAVTAGDTFQITALTLS
Ga0208004_108743023300025630AqueousDASTGGNALWSGALSSSAAVTAGDTFQITNLTLSLD
Ga0208160_100818213300025647AqueousTNVSTSETYSHWSLWDASSAGNALWSGALASSAAVTAGDTFQITSLTLTLD
Ga0208160_107067113300025647AqueousHWSAWDASTAGNCLWSGALSASASVAAGDTFQVTSLTLTLD
Ga0208898_105790653300025671AqueousMWDASTAGNCLWTGSLASSASVDAGDTFQITSLTLTLD
Ga0208547_108962413300025828AqueousDAATAGNCLWTGALTSSASLEAGDTFQITSLTLTLD
Ga0208917_101067393300025840AqueousWDASTAGNCLWTGSLASSASVDAGDTFQITSLTLTLD
Ga0208645_114341113300025853AqueousWDALSSGNALWSGALASSAAVVAGDTFQITSLTLTLE
Ga0208916_1014763213300025896AqueousWDASTAGNCLWTGALSSSAAVTAGDTFQITSLTLSLD
Ga0255064_103521913300027138FreshwaterSTTETYTHWSMWDAATAGNALWKGALSASAAVTAGDTFQITSLTLSLD
Ga0255080_103913623300027140FreshwaterWSMWDAATAGNALWKGALSASAAVTAGDTFQITSLTLSLD
Ga0255081_102816113300027155FreshwaterYTHWSMWDASTAGNALWKGALSASAAVTAGDTFQITSLTLSLD
Ga0208975_102257013300027659Freshwater LenticHWSLWDNSTGGNALWTGALSASAAVTAGDTFQITSLTLSLD
Ga0209297_102125813300027733Freshwater LakeDNLTAGNCLWTGALSSSAAVTAGDTFQITALTLSLD
Ga0209088_1036599113300027763Freshwater LakeDASTAGNCLWSGAFSSSAAVTAGDTFQITSLTLTLD
Ga0209500_1013369913300027782Freshwater LakeNVASTETLTHWSAWDASTAGNALWTGALSSSAAVTAGDTFQITTLTLSLD
Ga0209246_10006544123300027785Freshwater LakeWTNVSTTETYSHWSMWDDLTAGNALWSGALATSAAVTAGDTFQITSLTLSLD
Ga0209354_10006461143300027808Freshwater LakeTMEWTNVSTTETYSHWSMWDDLTAGNALWSGALATSAAVTAGDTFQITSLTLSLD
Ga0306869_109229223300028377Saline LakeSVSTTETYSHFSIWDAATVGNCLGSGALGASAAMTAGDTFQLTALTWTLD
Ga0119944_100245273300029930AquaticSLWDNSTAGNCLWKGALSASAAVTAGDTFQITSLTLTLD
Ga0315909_1016154113300031857FreshwaterMWDASTSGNPLWNGALSASAAVTSGDTFQITSLTLSLD
Ga0315274_1147531223300031999SedimentHWSLWDASTAGNALWSGALSSSAAVTAGDTFQITALTLSLD
Ga0315284_1217319213300032053SedimentSTTETYSHWSMWDNLTAGNALWSGALATSAAVTAGDTFQITSLTLSLD
Ga0315276_1111066923300032177SedimentWTNVSTTETYSHWSLWDDLTAGNALWTGALSTSAAVTAGDTFQITTLTLSLD
Ga0334986_0186635_3_1283300034012FreshwaterHWSMWDASTAGNALWTGALSASAAVTAGDTFQITSLTLSLD
Ga0334983_0489954_3_1193300034060FreshwaterLWDDVSAGNALWSGALATTAAVTAGDTFQITSLTLTLD
Ga0335022_0561342_466_5823300034095FreshwaterAWYASTGGNALWTGALSSSAAVTAGDTFQITTLTLSLD
Ga0335033_0280153_2_1483300034117FreshwaterSTTETYTHWSMWDAATDGNALWKGALSASAAVTAGDTFQITSLTLSLD
Ga0335033_0315104_2_1093300034117FreshwaterAATAGNALWKGALSASAAVTAGDTFQITSLTLSLD
Ga0335053_0242045_1037_11623300034118FreshwaterHWSMWDASTSGNPLWKGALSASAAVTAGDTFQITSLTLSLD
Ga0335058_0247954_926_10363300034121FreshwaterDAVTAGNCLWTGALSSSAAVTAGDTFQITSLTLSLD
Ga0335048_0129271_3_1103300034356FreshwaterDVTAGNALWTGALSTSAAVTAGDTFQITTLTLSLD
Ga0348335_020616_1_1173300034374AqueousAWDASSAGNCLWTGALTSSASLEAGDTFQITSLTLTLD
Ga0348335_081274_2_1273300034374AqueousHWSAWDAATAGNCLWTGALTSSASLEAGDTFQITSLTLTLD


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.