Scaffold Ga0119944_1001017

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1001017
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5035
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007363	Metagenome / Metatranscriptome	352	Y
F013526	Metagenome / Metatranscriptome	270	Y
F017484	Metagenome / Metatranscriptome	240	Y
F057310	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100101712	F013526	AGGAG	LTKKNVLISFITEAETDLDAIFALNKVMYKLPESDVVKFDAFEILDVVE
Ga0119944_100101713	F017484	AGG	MTIEIFRLNENGAGWVSLKNATDSELLDLELAVLTKAEVKMLCFKCHVEIPRGNVCVNHKDVKGAIYLD
Ga0119944_100101715	F057310	N/A	MKITYSVWQGSIIKGSKFTATNMKDVAKVIDDLNSTGVKPKFEAFISLVEQDDK
Ga0119944_10010173	F000808	GGAGG	MEKEYNYALTISYDGKLVSTYRTSDMLEAVDSWNKCVDFGDAKEYATYNLSDPFGKMFTKHFYRNGEVNGK
Ga0119944_10010175	F007363	AGGA	MKSYSIVDLLVDQYYAPTSLRRRFNGGIINYAEKRENVYLSEGYEAYSIRYRPTGSLKDEWATVAVKVSD
Ga0119944_10010179	F006744	AGG	MKLDEFKALIEAQRKASREEALSVLTAKMSNDNQRKEN