Scaffold Ga0119944_1000395

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000395
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7637
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008356	Metagenome / Metatranscriptome	334	Y
F011485	Metagenome / Metatranscriptome	290	N
F020140	Metagenome / Metatranscriptome	225	Y
F041765	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100039510	F008356	N/A	MNVSEFERTKPINTFKKIKELEKLIREEQIKTENLYANRIATLDSMLKAVHDLMDTFKKG
Ga0119944_100039512	F011485	N/A	MPMIKSFKLLIVSILASVAVFAADNEAPINASVTAGYNNHYIVNGLAKTGGQGFAGFTIGTAYFGVDTYLGGVVLPDSNGLDESHWNIGAGKSFAITEKFSLRADLQALRHQSAIVGGRNSIEIAPKIALVNPYVTPYIRGSHDFHLGQSGYIVGLERPTDVFGWFTVTPAVEYGKFTDYDVVAAKIGVSRTFFNHMTPYVDVGWYDNNFSPAKYNFAAQEFSGDIVAVAGVRWTF
Ga0119944_10003952	F020140	N/A	MTHKFAVVVDKKFYNNIQNNNDFYLRVIVLDVIRALVEESDIAKKYSEDLFYKCAKSISNEVKMFEDEETIIFYLELSSGYLDNFFEKPLDDLE
Ga0119944_10003957	F041765	N/A	MLNHKKIMEDSAEFFNKEVDKVIHNMTTAKTTKQRKKYIKQMIALKNRLSLEVRMLDDHSDF