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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029930 Open in IMG/M |
| Scaffold ID | Ga0119944_1000382 Open in IMG/M |
| Source Dataset Name | Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hong Kong |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7747 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (62.50%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Pearl River Delta area | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .5 | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001280 | Metagenome / Metatranscriptome | 732 | Y |
| F012013 | Metagenome / Metatranscriptome | 284 | Y |
| F021535 | Metagenome / Metatranscriptome | 218 | Y |
| F026561 | Metagenome / Metatranscriptome | 197 | Y |
| F083783 | Metagenome / Metatranscriptome | 112 | Y |
| F105019 | Metagenome / Metatranscriptome | 100 | Y |
| F105175 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0119944_10003821 | F021535 | N/A | MPAISKLSAQYPSLLFTMSYEEETGWGGECEFLRGEMISESDYENRCRDCESENTLDYCENDCGEICSSCNWMGEADLEAVAECQTHKIYLDEEHIPTYRKEALDNATRSI |
| Ga0119944_100038219 | F026561 | GGA | MDTPPNTQPSGAVTSREATRKHPKQGGGFKVDRNRHGIRRETSLVQPPKKTRPKKV |
| Ga0119944_100038220 | F001280 | GGCGG | MCVECGCESVGSETGIASVSINDVSNDGNAGLTLKMTATPEQRERFINE |
| Ga0119944_100038221 | F105175 | AGGAG | MADGKDLNGFTSPKVNDASPWSSNEQYAQDPKAAFPSTDKSSQDGAGLGNGGK |
| Ga0119944_100038222 | F105019 | N/A | MGKHHDKIAKSLEIRQRNWKNPAGKAPGSMNRKKTGYNRVKANGAK |
| Ga0119944_10003823 | F083783 | AGGTGG | MESEYINRKTQLVTYLQLHIQSLNEDLSQLSNKMDSLDPASKDYAELDFEYNYTSGQVSATMHILEYVEEIM |
| Ga0119944_10003825 | F012013 | AGG | MDKANINEPLDLQEATRRDDVYNQLNEIIDKLEKIPVFPSLMWVWSFDIIREIFENYQMKDLAVNDYVDEAVPEGITLKQIFDKFWDDVDGFGLSMDSGGDIIEEVIRDWMRDNNFLVSLDEDGWLDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |