Scaffold Ga0119944_1000199

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000199
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10526
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022870	Metagenome	212	Y
F031460	Metagenome / Metatranscriptome	182	Y
F053253	Metagenome	141	Y
F063633	Metagenome	129	Y
F084152	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100019915	F063633	AGG	MANTYKDKKVQHVQGLRRSGASGTHKNKVKDRQRRLSSAKIWEQYIKDENE
Ga0119944_100019929	F022870	N/A	MTLLLVGVYNKYISGQSCVDKYTADILATQFLYSEGIDRDRAITAIYNNGGWVENEYEELEEVIFPCLKNEEQI
Ga0119944_10001993	F084152	GGAG	MLTMDEYKVVDRILPNWLEQGDLIKVKEEVFQIVNILDTPTGWDLIVLDNYDDTKVISIPDGKHVNLVLQEHDLT
Ga0119944_10001994	F031460	AGGAGG	MAKVIDSVTVSLQMWATVELSAEEIQDIYPEFADWNDGDDTDLLERAIEEHMDFNYLELIQYADGSLDECKVDFNYEDDGSE
Ga0119944_10001998	F053253	AGG	MLERDTMIDFDLEYPLEKILTNMLDKVEGHVVNCKCVDCNSLEVLAYMIMVEE