Scaffold Ga0119944_1000067

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000067
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15722
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017816	Metagenome	238	Y
F022866	Metagenome	212	Y
F063491	Metagenome	129	Y
F069436	Metagenome	124	Y
F075836	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100006712	F063491	AGGAGG	MTTENPYPPPAPLVLADMCAVHAWSDQLDDQSRKLLEWAADTIRCVVRMNARLSHDKEQLEGDNAHLFMLHYGPQKGGAA
Ga0119944_100006714	F017816	GGCGG	MAPTLIAITGVIYLAVAADLSYSGRYGLAIAYAGYAAANVGLYLAAKG
Ga0119944_100006725	F075836	GAGG	MLVAFAGCIATLPSDPSLTADLACEAARAVLASKGTPEDDTKPKPGDTCPNCDGRGYVGDGVVKVECQPCGGTGKVKATATATSPSCPDGRCRL
Ga0119944_100006727	F069436	GAG	MTDAAKDTMFGILERWGFPTLVALGLAFFIRQDLLMPLLEEHRLTLKEVRETQREIADAVADQTRLLIAIQSGKPLPPLRTVDVAEPDHGKN
Ga0119944_10000675	F022866	AGGAGG	MRRTIDRLLPALVLVRLGQELGTASPVTRAIHDLLDLLATVAGVFRG