Scaffold Ga0245307_1000142

Overview

Basic Information

• Taxon OID: 3300029881
• Scaffold ID: Ga0245307_1000142
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37349
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151092
• Total Scaffold Genes: 203
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (43.84%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F076653	Metagenome	118	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F085718	Metagenome	111	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245307_100014212	F106193	N/A	VGCNTCKEKALRAERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSIYIKP
Ga0245307_1000142143	F076653	AGG	MTLSDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0245307_1000142198	F064725	GGA	VIYSNGYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
Ga0245307_100014221	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLKLSSCYLDRYIKEFNDLPKLTSLNITSGPPDMWNYFDINTLPFFEVDKINPNITDFAFLNDWMNGGRRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTPSQKKSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGLSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0245307_100014240	F058555	N/A	METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
Ga0245307_100014273	F080673	GGA	MKLQDEALLYLRDNITKGEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASCIGVNMYFRRQDVNAILNNINREKVMGYPYIAIQLDNIQTIEKRRVIFDITGHRMDDNKERIDFMFVYFMARLCV
Ga0245307_100014278	F078006	N/A	MIRGRFPAPWRNLNISSMEDNILKRAAAELKEAGCRVFAWQDDFYNRSWNKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCRVKEEATFDLATALDVLNEPLPMWCKSHGVYPEQYKDIDGWYNNNNHNKKIFKEI
Ga0245307_100014280	F085718	AGGAGG	MIIEFDFEIYKRGDYDKVYLRNGKEVRILCDNGKGNCPIVAMFDNNSGKNYTILRYDKTGRRYIDQQSNLDLMLSVKEWEPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV