NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245327_100251

Scaffold Ga0245327_100251


Overview

Basic Information
Taxon OID3300029878 Open in IMG/M
Scaffold IDGa0245327_100251 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35366
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89229
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (24.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044555Metagenome / Metatranscriptome154N
F064817Metagenome128N
F080163Metagenome115N
F101357Metagenome / Metatranscriptome102N
F105375Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0245327_100251101F105375N/AMKNNEIFQTTQHLDKLITNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245327_100251104F101357AGGMNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDDFHNYSNTSNTHYEGGKFPSMLTIQLFNLEF
Ga0245327_100251109F044555N/AMKTITRITINQNGNQILTCKVCKDTNNILFMSNEEILELISGLDYMDNLPTVPDLEKPIEIQITSTREIPIEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245327_1002512F080163N/AMKTIKFLQESFETKERFQQEISFKYSYNQNTVESVDFRINRHNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLESEVLDSEIELLQEKLDLIREEICKIMGINPDLQKKGHEENYIFNLNIDSDNQIGFLLQATEL
Ga0245327_10025199F064817N/AMNIKNLFNRFRKWEPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQKNQDENETI

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