NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307332_120040

Scaffold Ga0307332_120040


Overview

Basic Information
Taxon OID3300029837 Open in IMG/M
Scaffold IDGa0307332_120040 Open in IMG/M
Source Dataset NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036251Metagenome / Metatranscriptome170Y
F040648Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0307332_1200401F036251GGAGGMSAKERQTVLFGDTGVVAPIDTTERVRLSDGAVFVAQRIEIRPSNKYGEYVVFDGEDLDGKAFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFFTLV
Ga0307332_1200402F040648N/AVINNDEVRLKIDPLLDTAREGVTALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNTTTKSALKEALKGATQEQIERAYAILSGQDTAYEVPAGGEEE
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Institute for Fundamental Biomedical Research
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