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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029837 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321319 | Ga0307332 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 52323827 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 30 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 13 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012026 | Metagenome / Metatranscriptome | 284 | Y |
| F017318 | Metagenome / Metatranscriptome | 241 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F022205 | Metatranscriptome | 215 | Y |
| F022444 | Metagenome / Metatranscriptome | 214 | N |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F036251 | Metagenome / Metatranscriptome | 170 | Y |
| F040648 | Metagenome / Metatranscriptome | 161 | Y |
| F047076 | Metagenome / Metatranscriptome | 150 | N |
| F049017 | Metagenome / Metatranscriptome | 147 | N |
| F050405 | Metagenome / Metatranscriptome | 145 | N |
| F051952 | Metatranscriptome | 143 | N |
| F055836 | Metagenome / Metatranscriptome | 138 | Y |
| F056712 | Metagenome / Metatranscriptome | 137 | N |
| F068879 | Metagenome / Metatranscriptome | 124 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F093911 | Metagenome / Metatranscriptome | 106 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F097599 | Metagenome / Metatranscriptome | 104 | N |
| F101223 | Metagenome / Metatranscriptome | 102 | N |
| F103498 | Metagenome / Metatranscriptome | 101 | N |
| F105253 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307332_101895 | Not Available | 2280 | Open in IMG/M |
| Ga0307332_102582 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 2016 | Open in IMG/M |
| Ga0307332_104847 | All Organisms → cellular organisms → Bacteria | 1520 | Open in IMG/M |
| Ga0307332_105328 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1455 | Open in IMG/M |
| Ga0307332_107193 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1247 | Open in IMG/M |
| Ga0307332_107331 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1236 | Open in IMG/M |
| Ga0307332_108621 | Not Available | 1136 | Open in IMG/M |
| Ga0307332_110908 | Not Available | 996 | Open in IMG/M |
| Ga0307332_111361 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 972 | Open in IMG/M |
| Ga0307332_112033 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 939 | Open in IMG/M |
| Ga0307332_112242 | All Organisms → Viruses → environmental samples → uncultured virus | 930 | Open in IMG/M |
| Ga0307332_112608 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 914 | Open in IMG/M |
| Ga0307332_113701 | Not Available | 872 | Open in IMG/M |
| Ga0307332_114096 | Not Available | 859 | Open in IMG/M |
| Ga0307332_114410 | Not Available | 848 | Open in IMG/M |
| Ga0307332_118367 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 732 | Open in IMG/M |
| Ga0307332_118672 | Not Available | 725 | Open in IMG/M |
| Ga0307332_119387 | Not Available | 709 | Open in IMG/M |
| Ga0307332_120040 | Not Available | 695 | Open in IMG/M |
| Ga0307332_121622 | Not Available | 664 | Open in IMG/M |
| Ga0307332_122850 | Not Available | 643 | Open in IMG/M |
| Ga0307332_124896 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 611 | Open in IMG/M |
| Ga0307332_131989 | All Organisms → cellular organisms → Bacteria | 527 | Open in IMG/M |
| Ga0307332_132632 | Not Available | 521 | Open in IMG/M |
| Ga0307332_134704 | Not Available | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307332_101895 | Ga0307332_1018953 | F047076 | MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLQTQILKPKIVNQYEDPNNFRKLDIVKIDSVKDTSRDDVYWEVRHGKLLIYDSNKELITNETVGNHNLEIEYWVNISGAIKPFPTDTGIEIDPNAIEDWNKLIPDISDVEVRLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF |
| Ga0307332_102582 | Ga0307332_1025821 | F097599 | PEAPDPRLPGATRIAGPVTPNHILVFDRGACPNCYPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAPVQHVNLTEFENLKKELETAKAQTAELVNLKQELETLKAEKATAEKDAKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQQAEGTGATGGSGDAESTEEQKFANMAAEVAKATGIQFV |
| Ga0307332_102582 | Ga0307332_1025823 | F094051 | MGNTGILGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMRGIMKES |
| Ga0307332_104847 | Ga0307332_1048471 | F012026 | ALIGKRAEAINILHRLEKVEDRFNPKIIAEINAYKQAIEELSKELNRLEVEKGALLEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAAQRAREILMTKMTALAAVSGAYLPIPPQIGHAWREYAREYAYEIEHKGGD |
| Ga0307332_105181 | Ga0307332_1051812 | F020914 | MAIYQKYGFAIDQILSEDQALPKAKSGDSINTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTIGATDGTVTTVLPSILIKEGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESAEKVEAFSV |
| Ga0307332_105328 | Ga0307332_1053283 | F056712 | SNSETAAGLVGILEGLEKSLVRRLMKSSGKQPFLLVFLILFLSMNKKGKKKSEPEKDENYWRVIGGL |
| Ga0307332_107193 | Ga0307332_1071932 | F022444 | NQLDRKWKKHADEIELEVIQKLKGNSDYHVVEVVRASLKRFGVVKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA |
| Ga0307332_107331 | Ga0307332_1073311 | F055836 | WKYGNIAGAQGCCRPASPVRPRVRRGMELSEGGVVTIYKKKWSRQFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFRQDRELVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLKGRVFSVVETVERVTEKHGLRKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSHPRITVRPDDVKFYKVAIGRSGVEFRPPLPGYEKYWIPGCVQESMVVAESGKVDLSQEDFNRRSKELGFFAHLVDDR |
| Ga0307332_108621 | Ga0307332_1086212 | F070165 | ASLTSRLTTKSLGKFQNRLLGSLTGFQVPVDPGLSKRTEMVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307332_110908 | Ga0307332_1109082 | F051952 | HFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAIFTSLEDVVSANPQDRLNRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHRSSI |
| Ga0307332_111361 | Ga0307332_1113611 | F068879 | NKTATIPNRPVYVIGAPWRDNWVTKEEGFVAGATACPGCRRGLPPGVTVFANARINK |
| Ga0307332_112033 | Ga0307332_1120331 | F093911 | NGEITRTEYLAYLDFGYKPSDSVFLTQNKSTEMVTISYLSMENNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI |
| Ga0307332_112242 | Ga0307332_1122421 | F017318 | RGATRRVTRNKSPQHNMFSPLQAKPLKFERTVEGLYDISCDGINPSVGTWNFSLNDLPSYTEFTVLFDMYKIDRIEIEWYPEYTVLSDGGVTSPAVDVQFNSAIDPVGNTVTNVSDVLQYRTLKGTAINKIHKRSLVPAYLMDGIVPCACYISCTSPSSNLWGVVYGIAPTGTAMLFKSRAKFYLSFVQSR |
| Ga0307332_112608 | Ga0307332_1126082 | F031111 | KKEKSRFLVGKKRYISTIPQNSYYQIIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLFKPKISFSKNN |
| Ga0307332_113701 | Ga0307332_1137011 | F070165 | MGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDYRYEPAVIEVV |
| Ga0307332_114096 | Ga0307332_1140961 | F070165 | MKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307332_114410 | Ga0307332_1144101 | F101223 | MTEVTQEDLETLKSELNEIIKTRLDSFIDEFIATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVVLDLQPEMDLETFSSIKRNTIDYAIKQAQE |
| Ga0307332_118367 | Ga0307332_1183671 | F070158 | AQNMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNVEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKE |
| Ga0307332_118672 | Ga0307332_1186721 | F025291 | TKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307332_119387 | Ga0307332_1193871 | F050405 | MITEQEVITICKANYDANLITQGALLVGMRTVKEIIGSALYKKVEQIGYEELLEKCKTLAAWSVHALMVDRIATEMTNKGVYQLYTVGSNGVQLTELTQIKAAINEITTACANEIKDFIQERVAAHDPLY |
| Ga0307332_119666 | Ga0307332_1196661 | F105253 | GKMKKIIFLLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDSLYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKAYLIQAMQENE |
| Ga0307332_120040 | Ga0307332_1200401 | F036251 | MSAKERQTVLFGDTGVVAPIDTTERVRLSDGAVFVAQRIEIRPSNKYGEYVVFDGEDLDGKAFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFFTLV |
| Ga0307332_120040 | Ga0307332_1200402 | F040648 | VINNDEVRLKIDPLLDTAREGVTALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNTTTKSALKEALKGATQEQIERAYAILSGQDTAYEVPAGGEEE |
| Ga0307332_121622 | Ga0307332_1216221 | F025291 | KHYMVNLNRQINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK |
| Ga0307332_122850 | Ga0307332_1228502 | F103498 | MFVQDVNTLRMKKMDSIESCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVILIKDTMIQGFIALIVAVIGVYVSYLLLNVNGFV |
| Ga0307332_124896 | Ga0307332_1248961 | F077342 | ITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIDQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVVIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTIDEPAEPREILKLNPKRIF |
| Ga0307332_131989 | Ga0307332_1319892 | F012026 | MNLRELQATIANIIGQRAEAVDKLNRLMMIEDRFNPENITAINAYKQAIATLSEELTRHERERAELLAREEAARREYVAALNAYDEIYGRFPNAEKEAAELLKRYAKITDAAEKARSIVLEKMNALTAVAGGFLPIPPAPSHAWSTYA |
| Ga0307332_132632 | Ga0307332_1326321 | F049017 | EISAITMNGTPTPVKFQEFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNGSAWLSGYTVKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELAFDATLNTAIVGGSATFIDYN |
| Ga0307332_133834 | Ga0307332_1338341 | F020914 | DQILSEDQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESAEKVEAFSVRR |
| Ga0307332_134704 | Ga0307332_1347041 | F022205 | KFVNATNPTTTITANVMGLPLNRPCRPHAVEVRYAHSAPIGVRFRLYAGNSEEIYVSPALVAGPAPQVFRASLPANTDFAIYDSAATIMDFAGTATWAVRLIMAHKENTA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |