Scaffold Ga0245137_103840

Overview

Basic Information

• Taxon OID: 3300029830
• Scaffold ID: Ga0245137_103840
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6823
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F102167	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245137_10384014	F102167	N/A	IDHGIIDLDIMNGKMMGEYVAMLMIRSCEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTTIK
Ga0245137_1038403	F057001	AGG	VNLMTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENEIKVDKSIVPALVNLAKDKEIVIQLCKEILPRVNNTFCAYKEVEREYYDKNDQDKNKKLKMNEIEDVAILGSSHKRFGYNEPIEFDFGIYYEAFNGTDKRIVKCAVPIKRYTFSLIAKCITYYLTHPKNDR