Scaffold Ga0134854_1004180

Overview

Basic Information

• Taxon OID: 3300029822
• Scaffold ID: Ga0134854_1004180
• Source Dataset Name: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-3-30-T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chongqing University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8837
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location

• Location Name: China: Chengdu
• Coordinates
  • Lat. (^o): 30.65
  • Long. (^o): 104.06
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F011593	Metagenome / Metatranscriptome	289	Y
F022442	Metagenome / Metatranscriptome	214	Y
F033483	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134854_100418011	F033483	GGGGG	MTPGDASVTINIDGLPVVLVLPERDVELMMWTYRANRILQEGRDDE
Ga0134854_100418012	F022442	AGGGGG	MTFRPAGEARLDLYTDALLLDINRDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGAFRDIEQGLRLQRSQTDRSLMLTEQGRVYSIPVYRVLEVKDGIRESCTISMLVTDAQQLDDAHSRQIELGVRA
Ga0134854_100418020	F003987	GGAGG	MIPALPCGTFADSETPAGAFYVAAFEPGDAPHHVGEYRIDVVIRALQALQACGYDDVEIGSIERSDQTHLTLIGLDGEARFGDRQTGCIAVVPVEVEV
Ga0134854_10041808	F011593	GGCGG	MTPDQIHCVDCRTGLAAPEWCLGCPHPIYGNRKGEWDWYCRQYSPTGIRCSNVAVLRERCYRVREYFAKKEAST