NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245024_100563

Scaffold Ga0245024_100563


Overview

Basic Information
Taxon OID3300029819 Open in IMG/M
Scaffold IDGa0245024_100563 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P103V6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51167
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (93.18%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067720Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0245024_10056376F067720AGGAGGMASTTYDDFVEVNKIAQEHFRHITKMVIGRFRDLKKTYHLGAVTVMVRNAGQLPQPFWLGAARGGGSCSLSASVARA

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