NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0239581_1129629

Scaffold Ga0239581_1129629


Overview

Basic Information
Taxon OID3300029798 Open in IMG/M
Scaffold IDGa0239581_1129629 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Alinen Mustajarvi, Finland - AM11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUppsala University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)503
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland

Source Dataset Sampling Location
Location NameFinland: Alinen Mustajarvi in Hameenlinna
CoordinatesLat. (o)61.208142Long. (o)25.113609Alt. (m)Depth (m)5.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050095Metagenome145N
F091308Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0239581_11296291F091308N/APLVNTLMEIAVLNHASPSLLREKIYKALDEFLPDMDEGCRERGCIAVDDFKEKAVLGGEKKQEKA
Ga0239581_11296293F050095GGAGGMDWIDIVVGGIVAIFIVGGCLALYADATSHPWEDKD

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