Scaffold Ga0183826_1033848

Overview

Basic Information

• Taxon OID: 3300029792
• Scaffold ID: Ga0183826_1033848
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 802
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_041
• Coordinates
  • Lat. (^o): 14.6059
  • Long. (^o): 69.9776
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021559	Metagenome / Metatranscriptome	218	Y
F023877	Metagenome / Metatranscriptome	208	Y
F078838	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183826_10338481	F078838	GGAGG	MPFNTYIDDKDMIPVLLDHDWMIWKDTWTDCSYETYVALKKVLKHNGNAIPFLVGEMS
Ga0183826_10338482	F023877	GGAGG	VRQLIHEYVYDHYNTFGFYPYDVEVNGHIYTYDEYWRILNAI
Ga0183826_10338483	F021559	N/A	VEILNAYNPLEIKDILISGARRKATKHKLWGSVLGYYQEYDGYIHHYLLDSPEAWKDYGMMQAAYTMTDHTPADQQEYIKDVFYLYLDVLAADIGHKWDLHSKPRKEIEDEVLAIELKIRKESLGLIDGGKK