Scaffold Ga0183757_1004258

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1004258
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5032
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045797	Metagenome / Metatranscriptome	152	Y
F068236	Metagenome / Metatranscriptome	125	Y
F091012	Metagenome	108	Y
F098234	Metagenome / Metatranscriptome	104	Y
F106104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100425813	F098234	N/A	MDKVQLENRVKELTVLIEEASGNVKNLVDEQAAFTKRLDDLNKPKLSHSQMDEIQHAVESACETFDLDVSDCELELELDYDNRVSVNHLDWSRCQEELTQRIMDRLENVFAVAEEENVE
Ga0183757_100425816	F091012	N/A	MQNLWQRLKPAVKTKILAEKNEYPYLVKDVKTQLQKHKFWTDLPIGTCRQVVNFSHDSVYEVPLLDFMYGDLFIKKA
Ga0183757_100425818	F106104	N/A	MTTNEIEKQLKHKAEEQISDYARDIVDGLAMFAKDYTGVNRSGMHWYSKRVKPHKKYTSDPEPEDPFCHYDWSELAQLIRRNMEHNLLDQMVEKKAKELLSKIDLLG
Ga0183757_10042582	F045797	N/A	MKLLRTVKEDSCIYLIEDFAGTTISTKWRPYKVGELPNRFGIIEDGSDKGGLYEWFNYKGYTYVRDEREYKKYNHVKG
Ga0183757_10042583	F068236	AGGA	MSEMNENTKNTTTSKVKKFTHDEVIQVAGEYLICKETGKWVSEKDVENYETEMLNIEIQQFYEREQDKYY