Scaffold Ga0183757_1001611

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1001611
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9507
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026151	Metagenome	199	Y
F026922	Metagenome	196	Y
F089158	Metagenome	109	N
F090268	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100161111	F026151	N/A	MKKNLPTQDNVKRLMEQTLKNILSCVGGVYYNKYKLKLERKKDEKKNKSI
Ga0183757_100161114	F026922	AGGA	LVRILERIDMKHLKIDIEEVRFLINSYEDWYDTFDKDGYKYVIEQLNFDNKYYDDILSSLHNFIKGGEFYSIKIK
Ga0183757_100161126	F090268	GGAG	MTMFHGLGMFILGMFAIIIGGMIAWYIINKVEKNDKEER
Ga0183757_10016117	F089158	N/A	MKNSIVTWHGYENYNMNCSIEDLEKKGFECSSWNNDLAPSYTNKKGNIQVFFIDLDSDEMKAESMKHKFSLMKLDEHGEYSSDIGRTNSFEEMLKMVEGNE