Scaffold Ga0183757_1000072

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000072
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57842
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (79.01%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004809	Metagenome / Metatranscriptome	423	Y
F018623	Metagenome	234	Y
F042017	Metagenome	159	N
F042569	Metagenome	158	Y
F049691	Metagenome / Metatranscriptome	146	N
F089427	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100007225	F042017	GAG	MTAEIHNFYSHWKKKQEYLRKSLGYPADLWYTMLDNGYEPTNREDVEEFLKDILDE
Ga0183757_100007233	F089427	AGGA	MTWIIVQQCEDCNGQGELYGYNTIPYKCHECEGTGEKEYYEKNYHYDTIDEVTKDYSNTLSITLV
Ga0183757_100007239	F018623	AGGA	MKQVTMFDEVNKMKKYRVEWRQGRKIGAIGIFYPDSVVVYAEDEEAAHLKAYNTHEHLTGINVTEIGEVECSKIISQ
Ga0183757_100007249	F049691	AGGAG	MMMKGKGYPEHVKDTAKGFGDAPKAEVWGVRGSRSVLNEWDKSSYEFPAPKKSTRKASL
Ga0183757_100007256	F004809	GGAG	MTTNIKVGIAVGDAVLKHVEDDTTIGSNGTSDSPQPSTTRVLAIHALATAAGSYSIKGQRQITNKTAEGTAIKFQVAANEATDIYMGELGVPVYGVVSVSGPTDGCVLTAFIG
Ga0183757_100007278	F042569	GGAG	LAEFKLMKKMTSNEYYKLINNSTYISNLNQGNIIDPSRYLLTQKIKTFKKIKSKDDSNFMADQTKAQSNYGRVK