Scaffold Ga0243204_1000048

Overview

Basic Information

• Taxon OID: 3300029780
• Scaffold ID: Ga0243204_1000048
• Source Dataset Name: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-40_Run3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Zhejiang University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 159006
• Total Scaffold Genes: 213
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (43.66%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location

• Location Name: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F057001	Metagenome	137	Y
F078005	Metagenome	117	N
F080673	Metagenome	115	N
F083452	Metagenome	113	N
F093883	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243204_1000048195	F078005	N/A	MKKGKFVKELERIIDMVKAEDDGFEYGGKVVFYKEDDDSYEIWAKNIEMAMKVEANAIASLDDKTFACLMGEVYEQKFTKAIMMSEDEDDEDN
Ga0243204_100004821	F080673	GGA	MKLQDEALLYLRDNITKDEAYYILTTENEMTEVLMSKRKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
Ga0243204_100004827	F057001	AGG	MPIQVPRVRANLMTNKDINKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKDNDIKVDKAIVPALVALAKDKEVVIQLCKEILPRVNETFCAYKEIERVYFDKQEQDKNTKLSEDKVAEISITGKAHKRFGYNEPVEYEGGVYYEVFNGSDKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNDR
Ga0243204_100004835	F083452	N/A	MSGRIKIKPKNKDKKPDIDVFKVIEDRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0243204_100004858	F093883	N/A	MEEDKDIKKEIRDYLKEEADAHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0243204_100004872	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHTYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLNLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDINTLPFFEVDKINPNITDFDFLNDWVSGERRTGWNDDNMSGRGLEHLTGFIAVNSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE