3300029780: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-40_Run3

Overview

Basic Information

• IMG/M Taxon OID: 3300029780
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133112 | Gp0282341 | Ga0243204
• Sample Name: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-40_Run3
• Sequencing Status: Permanent Draft
• Sequencing Center: Zhejiang University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 203563836
• Sequencing Scaffolds: 23
• Novel Protein Genes: 28
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F051935	Metagenome	143	N
F056623	Metagenome	137	N
F057001	Metagenome	137	Y
F059982	Metagenome	133	N
F067845	Metagenome	125	N
F068856	Metagenome	124	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F073573	Metagenome	120	N
F073574	Metagenome	120	N
F074898	Metagenome	119	N
F077320	Metagenome	117	N
F078003	Metagenome	117	N
F078005	Metagenome	117	N
F080673	Metagenome	115	N
F082714	Metagenome	113	N
F083452	Metagenome	113	N
F087335	Metagenome	110	N
F089054	Metagenome	109	N
F090514	Metagenome	108	N
F091068	Metagenome	108	N
F093883	Metagenome	106	N
F096287	Metagenome	105	N
F101191	Metagenome	102	N
F101192	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243204_1000048	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	159006
Ga0243204_1000197	Not Available	85465
Ga0243204_1000529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	38582
Ga0243204_1002752	All Organisms → cellular organisms → Bacteria	8480
Ga0243204_1002846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8257
Ga0243204_1002900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8124
Ga0243204_1003885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6417
Ga0243204_1006234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4354
Ga0243204_1006565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	4186
Ga0243204_1010015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2954
Ga0243204_1011512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2639
Ga0243204_1013223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2355
Ga0243204_1013399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2329
Ga0243204_1013682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2289
Ga0243204_1015458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2072
Ga0243204_1016787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1927
Ga0243204_1022328	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1521
Ga0243204_1022490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1512
Ga0243204_1024355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1410
Ga0243204_1028479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1228
Ga0243204_1032454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1087
Ga0243204_1032592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1082
Ga0243204_1040176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	888

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243204_1000048	Ga0243204_1000048195	F078005	MKKGKFVKELERIIDMVKAEDDGFEYGGKVVFYKEDDDSYEIWAKNIEMAMKVEANAIASLDDKTFACLMGEVYEQKFTKAIMMSEDEDDEDN
Ga0243204_1000048	Ga0243204_100004821	F080673	MKLQDEALLYLRDNITKDEAYYILTTENEMTEVLMSKRKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
Ga0243204_1000048	Ga0243204_100004827	F057001	MPIQVPRVRANLMTNKDINKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKDNDIKVDKAIVPALVALAKDKEVVIQLCKEILPRVNETFCAYKEIERVYFDKQEQDKNTKLSEDKVAEISITGKAHKRFGYNEPVEYEGGVYYEVFNGSDKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNDR
Ga0243204_1000048	Ga0243204_100004835	F083452	MSGRIKIKPKNKDKKPDIDVFKVIEDRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0243204_1000048	Ga0243204_100004858	F093883	MEEDKDIKKEIRDYLKEEADAHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0243204_1000048	Ga0243204_100004872	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHTYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLNLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDINTLPFFEVDKINPNITDFDFLNDWVSGERRTGWNDDNMSGRGLEHLTGFIAVNSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0243204_1000197	Ga0243204_100019729	F089054	MLTLGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP
Ga0243204_1000529	Ga0243204_10005298	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNAGTDAEKAAELARQLGVAYAPELDSTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCDGVPDDVTVALPLDSTAMTAWLYAPQADSAAAELLKDAAGHSEMGAAFIDYNGTAYVVAVFR
Ga0243204_1002752	Ga0243204_10027528	F051935	MKRLLGLLMAVMVMMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFDAISYYVEGYGTTYINMNYDRGLEFLIDAPAYSRLSYEVYPVEDYSFGVEDFDLATCPLSMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKIEE
Ga0243204_1002846	Ga0243204_10028465	F087335	MIELYFNDANLLPENREEEQYAEATLNNLLAGKMADTGMCILPCFYDAPLHKGLLYHLDDGTILRIRPILNEAGEPELLIRCVTEETVEGMYQRVANYEFDEPCAGNVPS
Ga0243204_1002900	Ga0243204_10029007	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGANRFVILLTIVPAGSRTRAGSSLPLSPASNIFLKQTPRRGLPLAWNAGAVPFLFCG
Ga0243204_1003885	Ga0243204_10038858	F068856	MKRLTSILLALLMLVGMALAEEKSDAVLGDWYALNVDGTTECLTLREDGTFCYDSREGTWRKTTDGEYWLTFSRTGLLDVMASMVNSQVAEQDMTALLTENGLDVYYGSTAEGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMQMTYTPDKGERLAFCTIDGLTLIPGANLGDYPEGTSYPMTFEDGILSATIQMMVLVSSGTEETQEIEMDYYLTFFQTADGSLYATLRLSDVPDNSTTMFLLIPME
Ga0243204_1006234	Ga0243204_10062344	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGEVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQRNDENSDFVAYTQQYCKMEHGAAIYYIRPDVLFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITM
Ga0243204_1006565	Ga0243204_10065657	F077320	MKRKGMHRRRKLALLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPGNAFTAELPEEIDGRLSYIRDYSASGHYQIVWEDVSAEAAEAYLTALLDKGFTRLMGMAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTATPLPEWLADW
Ga0243204_1010015	Ga0243204_10100153	F074898	MRKILSLLLILALLLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEALGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDAIGTIELTQLLDDLF
Ga0243204_1011512	Ga0243204_10115123	F043413	MTERELREKLQFAYGTMPDATRAAFEHSLTHHRVKTRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMQVTAECEGQTYALEIEGCGGGDFMSGMFLPDETDSWSDSPFAFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDTCHPDAEKGFTLELQE
Ga0243204_1013223	Ga0243204_10132232	F070133	MKRLLGLLLAVMVMMGGMAGAQASTDNVSMQLIRMNPLAFRKEPVGLYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQENIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSFSAGE
Ga0243204_1013399	Ga0243204_10133992	F072366	MLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNNMDQAVQSDFDDAMTWYRDNGRKLLEAKNKTNN
Ga0243204_1013682	Ga0243204_10136823	F043945	MKHNLRMAFLSLLLVLTLGVMPVFAESTDHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLMPDMPGFFRWSAESSKYERVLYDGKELTTVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHT
Ga0243204_1015458	Ga0243204_10154584	F101192	MTYRGWLLVDIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQLAKAAPTSITPCGEDTIRRWVSERYQIALRFNRYDVCLGVEEEIDELGGEKCNRHE
Ga0243204_1016787	Ga0243204_10167873	F091068	MNEKNQHVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKEKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDDLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSV
Ga0243204_1022328	Ga0243204_10223281	F059982	PTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDDDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVGEEDAAATASPEV
Ga0243204_1022490	Ga0243204_10224902	F101191	LLISHHPASAECLQLGEGMLLCGFDLDRALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA
Ga0243204_1024355	Ga0243204_10243552	F056623	AAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSITLVRAEIPATPKRDWKPLILPLAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLHAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0243204_1028479	Ga0243204_10284792	F073574	MLLPTAVRPYAADVDGTASRVRCAIVLNGSKELRIQLCGRLKRGLFGRNQLLADGDVLCVALHEPDGDVPLFDSRCDGYANVLDDKQPPAPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPDDMFTWVWLSLRCTRCHAVFRGDLECD
Ga0243204_1032454	Ga0243204_10324542	F096287	AWWLSAACMLPGLCVYGALRLLLRRAHTQTLTDCARKLLGNFGGILIMLALILPLLLDGAASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAAGIIAINALLDAHPDGIVPLLGEGVPSLLSGIRSAWGMSWVLLLLLEFPAEEGTRRTPAMLAGLLPCPVILLLLSLTIPSELTVPGRSLASGLVLPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTAFTAWSLAPGVLLLLVLTIARLCRREKA
Ga0243204_1032592	Ga0243204_10325922	F082714	MVVGIRFAADAPVRTVLQAVLPIFPTADVDFLVREYWVCTFGNGLPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAVIKTLRKAVEIRSVEAVERETLARWAF
Ga0243204_1040176	Ga0243204_10401761	F073573	MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPITAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA