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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029775 Open in IMG/M |
| Scaffold ID | Ga0134843_1002709 Open in IMG/M |
| Source Dataset Name | Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-1-220-B |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chongqing University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11101 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (65.52%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Luzhou | |||||||
| Coordinates | Lat. (o) | 28.88 | Long. (o) | 105.45 | Alt. (m) | Depth (m) | .01 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F064748 | Metagenome / Metatranscriptome | 128 | Y |
| F078879 | Metagenome / Metatranscriptome | 116 | N |
| F092110 | Metagenome / Metatranscriptome | 107 | Y |
| F103501 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134843_100270911 | F092110 | N/A | MSCKDYLELKPGMKVKLSYEPWGYKDVNAVIDSVGVDYHYDETHNYGVFHPIIACYVGKYRMTFNGPINWETLVIKPCRKVYVKDLCVGDVIERDEMRGLIEIVSNENVYIRWYDKSCKVTYYTNYRNDIIFENAEIVGHVNLWNL |
| Ga0134843_100270918 | F064748 | AGG | MKRYRFIGNMEDVIPCENMSADCDAVGCKGKVWGQCHFDPKLELLSSGAEYFAEILTEREVIDTVFRVEKDGLFSSGGLNPLFVKNGKIWMKRWQIKNHFKQRTGYNCKTRTSIYLYQEYPEDAEVVEYALVEVKRTPVRKFVEGGE |
| Ga0134843_100270919 | F103501 | GGAGG | MITDIVLEGVVSYDNKYDLWCVDEDFIENTISEFEGKKVVVTITVI |
| Ga0134843_100270921 | F078879 | GAG | MTPEVSNEVKEGYDILEGIGIVERTESGQYYPTDVGAAIIYAVLCKQMLGAGEDEFKSEESQQVMLNRLEEMDLVEQGDESFVITIEGFTTFFTNLTYGCPCREEFIDWLALATAELAEEME |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |