Scaffold Ga0245216_100205

Overview

Basic Information

• Taxon OID: 3300029721
• Scaffold ID: Ga0245216_100205
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35389R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68098
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (21.88%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245216_10020553	F064817	N/A	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245216_10020555	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAMYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245216_10020559	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNSDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0245216_10020567	F044555	N/A	MKTTKPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNIPTVPDLEKPIEIQVSTTRQISLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245216_10020571	F080163	N/A	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENFLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLNSEIELLQEKLDLIREEICELIGVNPNLKKQGHEDNYVFNLNIKSDNQIGFFLQETEL
Ga0245216_10020572	F060985	GGA	MSNIDEEAKNNFTIEMRIFENYEKVKYEIIKAIDFLEHSGTAMGMCNIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRGLKTPIDKIDRENRIFGYWFPYYKKYIPHRIKVLKLALKDLVSDLD
Ga0245216_10020573	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDIHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALSDGIEGYPFKKYAIPYIFILVAWFIIFLHGLVS