3300029721: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35389R1

Overview

Basic Information

• IMG/M Taxon OID: 3300029721
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283852 | Ga0245216
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35389R1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 84341731
• Sequencing Scaffolds: 1
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245216_100205	All Organisms → cellular organisms → Bacteria	68098

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245216_100205	Ga0245216_10020553	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245216_100205	Ga0245216_10020555	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAMYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245216_100205	Ga0245216_10020559	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNSDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0245216_100205	Ga0245216_10020567	F044555	MKTTKPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNIPTVPDLEKPIEIQVSTTRQISLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245216_100205	Ga0245216_10020571	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENFLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLNSEIELLQEKLDLIREEICELIGVNPNLKKQGHEDNYVFNLNIKSDNQIGFFLQETEL
Ga0245216_100205	Ga0245216_10020572	F060985	MSNIDEEAKNNFTIEMRIFENYEKVKYEIIKAIDFLEHSGTAMGMCNIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRGLKTPIDKIDRENRIFGYWFPYYKKYIPHRIKVLKLALKDLVSDLD
Ga0245216_100205	Ga0245216_10020573	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDIHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALSDGIEGYPFKKYAIPYIFILVAWFIIFLHGLVS