Scaffold Ga0243361_120581

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0243361_120581

Scaffold Ga0243361_120581

Overview

Basic Information
Taxon OID	3300029672 Open in IMG/M
Scaffold ID	Ga0243361_120581 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-47_Run3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Zhejiang University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	746
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location
Location Name	China: Hangzhou
Coordinates	Lat. (^o)	30.0	Long. (^o)	120.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101193	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243361_1205812	F101193	GAGG	MARKCTEYHYFQHTYWDVMARYNWMRCPYCGKLCKPSRFKAAAVLVPIELVIFVVCIFFRNSMNDAIGWFAAYLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH

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