Scaffold Ga0245181

Basic Information
Taxon OID	3300029671 Open in IMG/M
Scaffold ID	Ga0245181_100267 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37190R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029671 Open in IMG/M

Scaffold ID

Ga0245181_100267 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37190R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	82688
Total Scaffold Genes	110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (20.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

82688

Total Scaffold Genes

110 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (20.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location Name	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

United Kingdom: London

Coordinates

Lat. (^o)

51.5

Long. (^o)

-0.12

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245181_10026719	F060985	GGA	MSNIDEKAKNNFTLEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPERFSYIGYGEYHFIRGNRWMKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0245181_10026721	F080163	N/A	MKTIKFLQESFETKERFQQEINIKYFYNQNTVESIDFCINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVISTYMKTYFDFCKDYSKISLHVHLVQFDSTTSVLIQGFYNYTHRDLSFSNKLEYQVLDSENELLQEKLDLIREEICKLIRIDPNLEKQGHEDNYVFNLNIESDNQIGFFLQAIIINS
Ga0245181_10026726	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPKYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245181_10026733	F105375	N/A	MKNNETFQTTQHLNKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245181_10026735	F064817	N/A	MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKISEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQYENETV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0245181_100267

Overview

Ecosystem & Geography

Associated Families

Sequences