Scaffold Ga0244883_100371

Overview

Basic Information

• Taxon OID: 3300029577
• Scaffold ID: Ga0244883_100371
• Source Dataset Name: Human fecal microbial communities from Shanghai, China - P012V1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84217
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (19.44%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244883_10037112	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTYIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0244883_10037114	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFATYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244883_10037117	F101357	N/A	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILEISLKDAYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0244883_10037120	F044555	N/A	MKTTNPSSRITISQNGNQILSCKVYKELNYILSMSNEEILELISGLYYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYDNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0244883_10037124	F080163	N/A	MKTIKFLQESFETKERFQQEISFKYFYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIELLQEKLDLIREETCELIGVNPNLEKQGHEDNYVFNLNIDSDNQIGFFLQATEL
Ga0244883_10037126	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRYAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLKLALKDLERIKEEYGKD
Ga0244883_10037127	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS