NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244921_100298

Scaffold Ga0244921_100298


Overview

Basic Information
Taxon OID3300029544 Open in IMG/M
Scaffold IDGa0244921_100298 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P034V1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73616
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (23.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044555Metagenome / Metatranscriptome154N
F080163Metagenome115N
F094005Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0244921_10029810F094005N/AMKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETLEKVITLDKKLKKLIEKLNE
Ga0244921_1002984F044555N/AMKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIGIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPGDLVSHSQHHKR
Ga0244921_1002988F080163N/AMKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAIQNFENSLVNEFKEKKNNFCNAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEVLDSEIELLQEKLDLIREGICELIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFFLQATKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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