3300029544: Human fecal microbial communities from Shanghai, China - P034V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029544
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283544 | Ga0244921
• Sample Name: Human fecal microbial communities from Shanghai, China - P034V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160954738
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
Not Available	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044555	Metagenome / Metatranscriptome	154	N
F047126	Metagenome	150	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N
F080163	Metagenome	115	N
F084124	Metagenome	112	Y
F094005	Metagenome / Metatranscriptome	106	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244921_100184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	102603
Ga0244921_100298	Not Available	73616
Ga0244921_100443	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	55149
Ga0244921_101003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	24086
Ga0244921_102198	Not Available	9143
Ga0244921_120248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1094

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244921_100184	Ga0244921_10018440	F084124	LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILNFSTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0244921_100298	Ga0244921_10029810	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETLEKVITLDKKLKKLIEKLNE
Ga0244921_100298	Ga0244921_1002984	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIGIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPGDLVSHSQHHKR
Ga0244921_100298	Ga0244921_1002988	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAIQNFENSLVNEFKEKKNNFCNAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEVLDSEIELLQEKLDLIREGICELIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFFLQATKL
Ga0244921_100443	Ga0244921_10044341	F099451	MELKKVGQLRKIIDNLSDDYEIEMRVRRKLSDEELKGCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKNY
Ga0244921_101003	Ga0244921_1010035	F047126	LFPKAYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPSGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0244921_102198	Ga0244921_10219817	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDNPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETV
Ga0244921_120248	Ga0244921_1202482	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADSNMSHTDDLNAFLYWSGCYGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLEDAAGHNEMGAAFIDYNGTAYVVAVFR