Scaffold Ga0244918

Basic Information
Taxon OID	3300029536 Open in IMG/M
Scaffold ID	Ga0244918_100177 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Shanghai, China - P032V6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029536 Open in IMG/M

Scaffold ID

Ga0244918_100177 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from Shanghai, China - P032V6

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	84528
Total Scaffold Genes	109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (21.10%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

84528

Total Scaffold Genes

109 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (21.10%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location Name	China: Shanghai
Coordinates	Lat. (^o)	31.2112312	Long. (^o)	121.4647709	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

China: Shanghai

Coordinates

Lat. (^o)

31.2112312

Long. (^o)

121.4647709

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F094005	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244918_10017741	F094005	N/A	MKKETVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0244918_10017742	F032312	N/A	MARIKDYDEDLSAPKILKRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244918_10017743	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVRHEIIKAIDFLRHSETPMGMCKIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSRFSFIGYGEYHTIRGNRWLKTPIDKIDKEDRIFGYWFPPYKKYIPYRIKVLKLALKDLERIKEG
Ga0244918_10017746	F044555	N/A	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0244918_10017758	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244918_100177

Overview

Ecosystem & Geography

Associated Families

Sequences