Scaffold Ga0244918_100056

Overview

Basic Information

• Taxon OID: 3300029536
• Scaffold ID: Ga0244918_100056
• Source Dataset Name: Human fecal microbial communities from Shanghai, China - P032V6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 162621
• Total Scaffold Genes: 220
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (42.73%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244918_100056115	F064725	AGAAG	VIQLAREGRLDFFCINDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCVADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLVQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI
Ga0244918_100056127	F050794	N/A	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGVKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
Ga0244918_100056204	F078005	GAGG	MVKTGDDGFEYGGKVIFYKEDDDDYEILVKNIEMNLMVEANTMASMDDRTFACLMGEVYKQKFTKAVTISEDEDDEDN
Ga0244918_10005625	F078006	N/A	MDNVLKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDPEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0244918_10005631	F080673	N/A	MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDMIEILIANKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARIL
Ga0244918_10005638	F057001	AGG	MTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSSKEVNEILKDNDIKVDRAIVPALAALAKDKEIVIQLCKEILPRVNNTFCAYKEIEREYYDKNDQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGTDKRIVKCAVPIKRYTFSLIAKCVTYYLTHPKNDR
Ga0244918_10005666	F058555	N/A	METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSNERRNMANKSRKFDRVRILSKIIFRARTRNVHHIYKVTKRKTIKFNVAYLLNELNKKLAGIGMHEISQSTIYRYISMFLGMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGSEMSKAG
Ga0244918_10005671	F093883	N/A	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELENMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0244918_10005677	F089592	N/A	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGMDKDEVDRLVNQRVNNIMKPFEDISQKDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGDKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKKVKDVKKKEDVGEGDKVNTEE
Ga0244918_10005678	F089591	GGAGG	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLKEVSHIDDPESTSFGLPDDYLWFSNIKGAFSYKGCEVGDFVMWEANNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFK
Ga0244918_10005685	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDNYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLIVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRNIESSGIRNIKNMKNLQTLDLSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAVHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYAAACPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWMIKPE
Ga0244918_10005688	F089590	AGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0244918_10005689	F075481	AGAAG	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTVDSLGIDKTITGVKDIDKKTDIEHKDVDDKKESRWPIVWIVAGILMILLVLVYILKKIKIL