NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244920_100160

Scaffold Ga0244920_100160


Overview

Basic Information
Taxon OID3300029531 Open in IMG/M
Scaffold IDGa0244920_100160 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P033V6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86010
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (22.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F060985Metagenome / Metatranscriptome132N
F080163Metagenome115N
F105375Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0244920_1001601F105375N/AMKNNETFQTTQHLDKLVTNLGLQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSVMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244920_10016016F080163N/AMKTIKFLQESFETKEKFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESINDFDKILFVIITYMKAYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESQVLDSENELLQERLDLIREEICELIGIDPNLEKQGHEDNYIFNLNIDSDNQIGFFLQATEL
Ga0244920_10016017F060985GGAMSNIDEKVKNNFTIEMRIFENYEKVKYEIIKAIDFLEHSGTAMGMCNIFDSQDHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPYYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0244920_10016018F032312GAGMPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYNGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
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