Scaffold Ga0244833_100513

Overview

Basic Information

• Taxon OID: 3300029521
• Scaffold ID: Ga0244833_100513
• Source Dataset Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012168-57
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49289
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (22.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244833_10051311	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244833_10051312	F060985	GGA	MSNIDEKAKNNFTIEMKIFENYEKVKYEIIKVIDFLRHAGTNLGMCKIFDNQNHGFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPYRIKVLRLALKDLERIKEEYGKD
Ga0244833_10051327	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETV