Scaffold Ga0244840_100166

Overview

Basic Information

• Taxon OID: 3300029519
• Scaffold ID: Ga0244840_100166
• Source Dataset Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012175-89
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97465
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (84.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097172	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244840_1001662	F097172	AGGAGG	MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKALKTGKYVVTLDNLQGTDDKSLKCLNIYICRIAKNGKKYFLEDDLYPDTVGNYGDLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYVFVIDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYKK
Ga0244840_1001663	F097172	AGGAGG	MKKNVLKKLMCAVLATACVVTAVVPAMADDVVTAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKDKFTTRLKKGQTYVFVIDNRGMAEPCKPYLDEFGSDHQSCLSGGNYLKAYSFDMNIEFRK