Scaffold Ga0244841

Basic Information
Taxon OID	3300029515 Open in IMG/M
Scaffold ID	Ga0244841_100149 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012177-93
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029515 Open in IMG/M

Scaffold ID

Ga0244841_100149 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012177-93

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	85380
Total Scaffold Genes	113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (24.78%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

85380

Total Scaffold Genes

113 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (24.78%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location
Location Name	China: Shanghai
Coordinates	Lat. (^o)	31.2123446	Long. (^o)	121.4684853	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

China: Shanghai

Coordinates

Lat. (^o)

31.2123446

Long. (^o)

121.4684853

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244841_100149108	F032312	N/A	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIERYPFKKYAVPYTFILVTWFIIFLYGLVS
Ga0244841_100149109	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCKIFDNQNHGFWYSVIKPWFQPERFGITHLWFPERFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD
Ga0244841_100149112	F080163	N/A	MKTIKFLQESFETKERFQQEISFKYSYNRDIVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKTNFCNAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVNPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0244841_10014912	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILEISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0244841_10014914	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEIIDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244841_100149

Overview

Ecosystem & Geography

Associated Families

Sequences