3300029515: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012177-93

Overview

Basic Information

• IMG/M Taxon OID: 3300029515
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283464 | Ga0244841
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012177-93
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 153056585
• Sequencing Scaffolds: 5
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F080163	Metagenome	115	N
F090515	Metagenome	108	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244841_100149	Not Available	85380
Ga0244841_108919	Not Available	2559
Ga0244841_109445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2430
Ga0244841_129378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	897
Ga0244841_130977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	851

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244841_100149	Ga0244841_100149108	F032312	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIERYPFKKYAVPYTFILVTWFIIFLYGLVS
Ga0244841_100149	Ga0244841_100149109	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCKIFDNQNHGFWYSVIKPWFQPERFGITHLWFPERFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD
Ga0244841_100149	Ga0244841_100149112	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDIVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKTNFCNAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVNPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0244841_100149	Ga0244841_10014912	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILEISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0244841_100149	Ga0244841_10014914	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEIIDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244841_108919	Ga0244841_1089193	F067720	MSSTTYEHFVGVNKMYAVQEHFRDVTKMVTKRHRFAAIGNMVRNAGQLPQPFWLGAACGGGSCSVARCAAKA
Ga0244841_109445	Ga0244841_1094451	F062845	DSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACT
Ga0244841_129378	Ga0244841_1293781	F090515	CKVGPKTALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0244841_130977	Ga0244841_1309771	F032286	MVEWVCQIVTPVRYRALIFDTRLFAGNAADDVLVAGSTFRFCRLMCLCVKRRNIILNGKRHSLLNSALFHADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVPVGTLALSRSWRLLRWETYPVRTVMQFSRFRC