Scaffold Ga0244793_100390

Overview

Basic Information

• Taxon OID: 3300029500
• Scaffold ID: Ga0244793_100390
• Source Dataset Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005360-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21979
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location

• Location Name: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244793_10039031	F044555	N/A	MKTTNPSSRITLSQNGNQILSCKVYKEPNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0244793_10039036	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDSRLFGYWFPPYKKYIPHRIKVLRLALKDLERIKEEYGKD