3300029500: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005360-15

Overview

Basic Information

• IMG/M Taxon OID: 3300029500
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283416 | Ga0244793
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005360-15
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61581981
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F044555	Metagenome / Metatranscriptome	154	N
F052660	Metagenome	142	N
F060985	Metagenome / Metatranscriptome	132	N
F067844	Metagenome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244793_100390	All Organisms → cellular organisms → Bacteria	21979
Ga0244793_100413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia	20563
Ga0244793_100792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	10043
Ga0244793_113830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	736

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244793_100390	Ga0244793_10039031	F044555	MKTTNPSSRITLSQNGNQILSCKVYKEPNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0244793_100390	Ga0244793_10039036	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDSRLFGYWFPPYKKYIPHRIKVLRLALKDLERIKEEYGKD
Ga0244793_100413	Ga0244793_10041320	F067844	MNTLAAETASAWYLILNRKLQTLPFYKAQLSSPLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP
Ga0244793_100792	Ga0244793_10079211	F052660	MCILRVLPENTPEKIGQERAGTERSVVKSKIRLCIRNRSYGRFFYGGILMGIVLPIPSHRAKSHDFACWWPVAAGHSRSADALPGKLNS
Ga0244793_113830	Ga0244793_1138302	F032286	VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIILNGKRRSLLNSTLFLADNHTRQKAISPFSLALIFTFDFADLSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQLSTSHESPSQLRMKHRWPGAARPAAV