Scaffold Ga0244010_1000371

Overview

Basic Information

• Taxon OID: 3300029493
• Scaffold ID: Ga0244010_1000371
• Source Dataset Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84784
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (24.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location

• Location Name: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244010_100037110	F094005	N/A	MKKEAIRLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0244010_1000371100	F064817	N/A	MNIKNLFNRFRKRELELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKPSGKSDMVITEEKYQAAKALVPAHEVSDGFKIPEYITRVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0244010_1000371102	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLKEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244010_1000371105	F101357	N/A	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNINNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKNDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0244010_1000371110	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLFDTLVDELKGTISRFQAQYKIQEINPDILQNPEDLVSLSQHR
Ga0244010_10003716	F080163	N/A	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENYLVNEFKEKKNNFCNVKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLYVHLVQFDFTTSVLIQGFYNYTHKDLSFSTKLESEVSNSEIELLQEKLNLIREEICKLIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFFLQETNL
Ga0244010_10003719	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGPEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTGFKLLVASLMLLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIVFLYGLVS