NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1011020

Scaffold Ga0183755_1011020


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1011020 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3538
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006383Metagenome374Y
F006867Metagenome / Metatranscriptome363Y
F015346Metagenome / Metatranscriptome255Y
F054842Metagenome139Y
F062169Metagenome / Metatranscriptome131N
F098215Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_101102010F062169GGAGMSVQDHIENILNAEGQGALDAWYVAIHEHPQNAMDIHDVVIDHLVENTFLY
Ga0183755_101102012F006867GGAGMLYGKELAQSIQKRCKIQPGMLVKSTAGTTVSKVALVVRLSPACEFDRDYEGSEDHIFYICEPCDGTPAFSDYVTNMEQVS
Ga0183755_101102014F015346GAGMEHRLYNVGELVAVASNRVLGIITKSNYWALDEYLGGEIEFVDVMFGSSVSKQYPVRYLAEL
Ga0183755_101102016F006383GGAGGMRDKMWEVQQPGTLLRARSSHQYGKLALVLEEAYVGPTPSNGYPPRQYVKMQWVATGERFEEMLTNAH
Ga0183755_10110203F054842GAGGMSNKEWRKKLKAGDLVMMKTGGMAILTEVFFRFPETDPSYPHIKMIYCDDNTPGSCSAWRVEELINASR
Ga0183755_10110209F098215GGAVKADFEYQLGDLVSFNSRQLTEEYINDVVLTGVVIKQRLVFTADNKFLVRTAERDYWVSRPRLTLLSRAQNKT
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