NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1004925

Scaffold Ga0183755_1004925


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1004925 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6293
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005620Metagenome395Y
F014071Metagenome / Metatranscriptome266Y
F028524Metagenome / Metatranscriptome191Y
F067209Metagenome126Y
F084852Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100492511F005620AGGAMTQEAVYDKQIETFKTFCKNNRLRLKEDGDGLPVARAIGKFRTDQFFCNFKDGTIGVYVTRETQRQFTYLNKKLIKMGCIPTQLGDFEASYDLEWMNIPPVAKLLKIKKGAAKVRDPKWLRT
Ga0183755_100492512F067209GAGMATHMMLDPLDEEGEMTLDEWTHKFNSGNGQEATAELAAKFMFAMSYYHDRMRLHIMLHPLFFVAGFLAAFYLL
Ga0183755_100492513F014071AGGAGMATRPGRLIDKTFTSFTEASGRLEDTIGWVTAAKEFANEFQPGCKAEVTLHLLEQVLEKAHSELDKASEELAVEVFGK
Ga0183755_100492514F084852GAGGMRDLKKFEKDIQNILDKFQFAGETRRQIFSQIMEYASEQERYNAEQEAGNPQKGSQND
Ga0183755_100492515F028524AGGMTNTANEFKSTVKEFVTKLTTIENEMTILRQDRSELFAEMKSKLDPRSFRAALKIHNLQKSTPDQTSLHRILEVLETEE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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