Basic Information | |
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Taxon OID | 3300029448 Open in IMG/M |
Scaffold ID | Ga0183755_1003270 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8170 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (85.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea: TARA_023 | |||||||
Coordinates | Lat. (o) | 42.1735 | Long. (o) | 17.7252 | Alt. (m) | Depth (m) | 55 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003051 | Metagenome / Metatranscriptome | 510 | Y |
F010318 | Metagenome / Metatranscriptome | 305 | Y |
F010532 | Metagenome | 302 | N |
F028971 | Metagenome / Metatranscriptome | 190 | Y |
F031261 | Metagenome | 183 | Y |
F087019 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0183755_100327011 | F087019 | GAGG | MIGEVIGLMLVIGFMLFCLVGVAFIIADKNYDNKKKND |
Ga0183755_100327012 | F003051 | GAGG | MKTKILKSKVSIDMSVSEYDTLFKYIGKLDSMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGAK |
Ga0183755_100327015 | F010532 | AGGAG | MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEVDIIHRIEEHVSYMVSSFLNKSYEGISVD |
Ga0183755_100327017 | F010318 | GAG | MNVDSDKPRFIECVYETSITFDLEELGIEWDKVKDYHVKWGTLYVEFKDGSSVQHDGITDIGEIDYKWAEKENILTDSWDKVEGLN |
Ga0183755_100327018 | F031261 | AGGAG | MRTRTYVMSVEKDSPAVLEQLNKLQEVRQGVRLLNRHSKRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYEK |
Ga0183755_10032709 | F028971 | AGCAGG | MVEIKDTELTPMSKEEFRAWEEYVIKYNHDNSTDQIAYEVVWNKDEYKVKLLDLRVDKEGQE |
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