NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1003270

Scaffold Ga0183755_1003270


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1003270 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8170
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F010318Metagenome / Metatranscriptome305Y
F010532Metagenome302N
F028971Metagenome / Metatranscriptome190Y
F031261Metagenome183Y
F087019Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100327011F087019GAGGMIGEVIGLMLVIGFMLFCLVGVAFIIADKNYDNKKKND
Ga0183755_100327012F003051GAGGMKTKILKSKVSIDMSVSEYDTLFKYIGKLDSMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGAK
Ga0183755_100327015F010532AGGAGMNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEVDIIHRIEEHVSYMVSSFLNKSYEGISVD
Ga0183755_100327017F010318GAGMNVDSDKPRFIECVYETSITFDLEELGIEWDKVKDYHVKWGTLYVEFKDGSSVQHDGITDIGEIDYKWAEKENILTDSWDKVEGLN
Ga0183755_100327018F031261AGGAGMRTRTYVMSVEKDSPAVLEQLNKLQEVRQGVRLLNRHSKRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYEK
Ga0183755_10032709F028971AGCAGGMVEIKDTELTPMSKEEFRAWEEYVIKYNHDNSTDQIAYEVVWNKDEYKVKLLDLRVDKEGQE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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