Scaffold Ga0183755_1002930

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1002930
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8791
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017401	Metagenome	241	Y
F046635	Metagenome	151	N
F056910	Metagenome	137	N
F081761	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100293011	F017401	N/A	MVNVCMATPAGQPQVNKDNQLCKKLGTLARTDAYVPQCVDRKSSNFLTIILEFIAVLAIMLGLIIAAWCVAVIV
Ga0183755_100293021	F081761	AGG	LTTDKVIPLHNPHSEIDQQWLALERQQKLIREQLEKILEQKK
Ga0183755_10029304	F046635	GGAGG	MITCPECNGDKYITITLYHRQGFGRDVGYEETRQEACPTCQGEGQIEGEHDDQE
Ga0183755_10029308	F056910	GAGG	MPTKIKPNAMKRSDAADFCGISVSQFGKMIKLGTMPTARNAGGAKIWLRTELEDALTALALDGEKDEECDNNKVFGIAT